2022

Indexed, Peer-Reviewed Publications

  • G. Melkus, K. Cerans, K. Freivalds, P. Kikusts, L. Lace, D. Zajakina, J. Viksna. Behavioral dynamics of bacteriophage gene regulatory networks. Journal of Bioinformatics and Computational Biology, Vol. 20, No. 5 (2022) 2250021 (22 pages). (SCOPUS, Web of Science). ISSN: 02197200, DOI, link
  • L. Lace, K. Cerans, K. Freivalds, G. Melkus, J. Viksna. Hybrid gene regulation models of mammalian circadian cycles. Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies, Volume 3:BIOINFORMATICS, pp.130-137, 2022. (WebOfScience). ISBN: 978-989-758-552-4 DOI, link
  • S. Kozlovics, J. Viksna. POSTER: A Transparent Remote Quantum Random Number Generator over a Quantum-Safe Link. Lecture Notes of Computer Science, vol. 13285, pp. 595-599, 2022. (SCOPUS, Web of Science). ISBN: 978-303116814-7 DOI, link
  • S. Kozlovics. Shared SAT Solvers and SAT Memory in Distributed Business Applications. Communications in Computer and Information Science, Volume 1598, CCIS, Pages 201-216, 2022, 15th International Baltic Conference on Digital Business and Intelligent Systems, Baltic DB and IS 2022, Riga, Latvia. (SCOPUS). ISBN: 978-303109849-9 DOI, link1, link2
  • E. Gaile, A.Dragūns, E.Ozoliņš, K.Freivalds. Unsupervised Training for Neural TSP Solver. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Volume 13621, LNCS, Pages 334-346, 2022, 16th International Conference on Learning and Intelligent Optimization, LION, 2022, Milos Island, Greece. (SCOPUS). ISBN: 978-303124865-8 DOI, link1, link2
  • E. Ozolins, K. Freivalds, A. Draguns, E. Gaile, R. Zakovskis, S. Kozlovics. Goal-Aware Neural SAT Solver. Proceedings of the International Joint Conference on Neural Networks, Volume 2022-July, 2022 International Joint Conference on Neural Networks, IJCNN 2022, Padua, Italy. (SCOPUS, Web of Science). ISBN: 978-172818671-9 DOI, link1, link2
  • K. Čerāns, J. Ovčinnikova, M. Grasmanis, L. Lāce. Experience with Visual SPARQL Queries over DBPedia. CEUR Workshop Proceedings, Volume 3253, Pages 59-65, 2022, 7th International Workshop on the Visualization and Interaction for Ontologies and Linked Data, VOILA! 2022, Virtual, Hangzhou, China. (SCOPUS). ISSN: 16130073 link
  • K. Čerāns, J. Ovčinnikova, M. Grasmanis, L. Lāce. Towards UML-Style Visual Queries over Wikidata. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Volume 13384, LNCS, Pages 11-15, 2022, 19th European Semantic Web Conference, ESWC 2022, Hersonissos, Greece. (SCOPUS, Web of Science). ISBN: 978-303111608-7 DOI, link
  • P. Barzdins, A. Kalnins, E. Celms, J. Barzdins, A. Sprogis, M. Grasmanis, S. Rikacovs, G. Barzdins. Metamodel Specialisation based Tool Extension. Baltic Journal of Modern Computing, Volume 10, Issue 1, Pages 17–35, 2022. (SCOPUS, Web of Science). ISSN: 22558942 DOI, link
  • I. Pretkalnins, A. Sprogis, G. Barzdins. CLIP Augmentation for Image Search. In Proceedings of the 7th International Conference on Complexity, Future Information Systems and Risk - COMPLEXIS, Pages 71-78. (WebOfScience). ISBN: 978-989-758-565-4 DOI, link
  • K. Freivalds, S. Kozlovics. Denoising Diffusion for Sampling SAT Solutions. In NeurIPS 2022 Workshop on Score-Based Methods. New Orleans, 2022. link1, link2

Posters in International Conferences

  • J. Viksna, L. Lace, G. Melkus, P. Rucevskis, E. Celms, S. Silina, A. Sizovs. Cell type specificity of Hi-C interaction network topology and gene expression. The 21st European Conference on Computational Biology ECCB 2022, Sitges, Spain, September 2022.
  • G. Melkus, L. Lace, P. Rucevskis, S. Silina, A. Sizovs, E. Celms, J. Viksna. Structural comparison of chromatin interaction networks generated from Hi-C data. The 21st European Conference on Computational Biology ECCB 2022, Sitges, Spain, September 2022.
  • S. Kozlovics, J. Viksna. A Transparent Remote Quantum Random Number Generator over a Quantum-Safe Link. The 20th International Conference on Applied Cryptography and Network Security ACNS 2022. Rome, Italy, June 2022.
  • J. Viksna, K. Cerans, L. Lace, G. Melkus. Power and limitations of hybrid system models for gene regulatory networks. 18th International Symposium on Bioinformatics Research and Applications ISBRA2022, Haifa, Israel, November 2022.
  • L. Lace, G. Melkus, K. Cerans, J. Viksna. Hybrid system based gene regulation models of circadian cycles. The 21st European Conference on Computational Biology ECCB 2022, Sitges, Spain, September 2022.
  • J. Viksna, E. Kalnina, S. Kozlovics, L. Truksans. Securing IPsec Communications with Quantum Key Distribution. The International Conference on Emergent Quantum Technologies ICEQT 2022, August 2022. (Virtual)
  • L. Truksans, E. Kalnina, A. Lapins, E. Rencis, J. Viksna. Securing IPSEC Communications With Quantum Key Distribution. Poster presentation at the 2022 World Congress in Computer Science, Computer Engineering, & Applied Computing (CSCE'22), Las Vegas, Nevada, USA, July 25-28, 2022.
  • L. Lace, K. Cerans, K. Freivalds, G. Melkus, J. Viksna. Hybrid gene regulation models of mammalian circadian cycles. The 12th International Joint Conference on Biomedical Engineering Systems and Technologies BIOINFORMATICS 2022, February 2022. (Virtual).

Publications in the Annual Conference of the University of Latvia

  • K. Freivalds. Solving Algortithmic Problems by Deep Neural Networks: Accomplishments and Perspective. Referāts Latvijas Universitātes 80. starptautiskā zinātniskā konferencē. Plenārsēde. Inovatīvas informācijas tehnoloģijas. 2022. gada 4. februāris. Datorzinātne un informātika
  • A. Šostaks, S. Rikačovs, A. Sproģis, E. Celms. Editor for Graphical Language CAL: Development and Integration in Interreg BalticLSC Project. Referāts Latvijas Universitātes 80. starptautiskā zinātniskā konferencē. Plenārsēde. Inovatīvas informācijas tehnoloģijas. 2022. gada 4. februāris. Datorzinātne un informātika
  • K. Čerāns, M. Grasmanis, L. Lāce, J. Ovčiņņikova. Visual Queries over Knowledge Graphs: Possibilities and Challenges. Referāts Latvijas Universitātes 80. starptautiskā zinātniskā konferencē. Plenārsēde. Inovatīvas informācijas tehnoloģijas. 2022. gada 4. februāris. Datorzinātne un informātika
  • G. Melkus, K. Čerāns, K. Freivalds, L. Lāce, J. Vīksna. Hybrid gene regulation models of circadian cycles. Referāts Latvijas Universitātes 80. starptautiskā zinātniskā konferencē. Sekcijas sēde - Datorzinātne un informācijas tehnoloģijas. 2022. gada 11. februāris. Datorzinātne un informātika
  • R. Balodis, E. Celms, A. Draguns, A. Lapiņš, E. Kalniņa, L. Lāce, I.Opmane, M. Opmanis, L. Trukšāns, J. Vīksna. Performance tests of quantum cryptographic key distribution systems in existing communication network infrastructure. Referāts Latvijas Universitātes 80. starptautiskā zinātniskā konferencē. Sekcijas sēde - Datorzinātne un informācijas tehnoloģijas. 2022. gada 11. februāris. Datorzinātne un informātika
  • E. Kalniņa, D. Kosarevskis. Concrete syntax-based find and find-replace for models built with domain-specific modelling languages. Referāts Latvijas Universitātes 80. starptautiskā zinātniskā konferencē. Sekcijas sēde - Datorzinātne un informācijas tehnoloģijas. 2022. gada 11. februāris. Datorzinātne un informātika
  • I. Pretkalniņš, A. Sproģis. CLIP Augmentation for Image Search. Referāts Latvijas Universitātes 80. starptautiskā zinātniskā konferencē. Sekcijas sēde - Datorzinātne un informācijas tehnoloģijas. 2022. gada 11. februāris. Datorzinātne un informātika
  • E. Ozoliņš, K. Freivalds. Solving Mixed Integer Programming using neural networks. Referāts Latvijas Universitātes 80. starptautiskā zinātniskā konferencē. Sekcijas sēde - Datorzinātne un informācijas tehnoloģijas. 2022. gada 11. februāris. Datorzinātne un informātika

2021

Indexed, Peer-Reviewed Publications

  • E. Celms, J. Barzdins, A. Kalnins, P. Barzdins, A. Sprogis, M. Grasmanis, S. Rikacovs. DSL approach to deep learning lifecycle data management. Baltic Journal of Modern Computing, Volume 8, Issue 4, 2021, Pages 597-617. (SCOPUS) DOI, link
  • K. Podnieks. Philosophy of Modeling in the 1870s: A Tribute to Hans Vaihinger. Baltic Journal of Modern Computing, Volume. 9 (2021), Issue 1, pp. 67–110, (SCOPUS, Web of Science). ISSN: 22558942 DOI, link
  • B. Abedi-Ardekani, D. Nasrollahzadeh, L. Egevad, R.E. Banks, N. Vasudev, I. Holcatova, C. Povysil, L. Foretova, V. Janout, D. Mates, V. Jinga, A. Petrescu, S. Milosavljevic, M. Ognjanovic, S. Ognjanovic, J. Viksna, A.Y. Warren, M. Lathrop, Y. Riazalhosseini, C. Carreira, E. Chanudet, J. McKay, P. Brennan, G. Scélo. Morphological findings in frozen non-neoplastic kidney tissues of patients with kidney cancer from large-scale multicentric studies on renal cancer. 2021, Virchows Archiv, 478 (6), pp. 1099-1107. (SCOPUS, Web of Science). ISSN: 09456317 DOI
  • K. Čerāns, J. Ovčiņņikova, U. Bojārs, M. Grasmanis, L. Lāce, A. Romāne. Schema-Backed Visual Queries over Europeana and Other Linked Data Resources. ESWC 2021 Satellite Events. Springer LNCS, Vol.12739, pp.82-87. (SCOPUS) ISBN: 978-303080417-6 DOI, link Grant: lzp-2020/2–0188
  • E. Ozolinš, K. Freivalds, A. Šostaks. Matrix Shuffle- Exchange Networks for Hard 2D Tasks. 2021 International Joint Conference on Neural Networks (IJCNN), 2021, pp. 1-8. (SCOPUS). ISBN: 978-073813366-9 DOI, link Grant: lzp-2018/1-0327
  • A. Draguns, E. Ozolins, A. Sostaks, M. Apinis, K. Freivalds. Residual Shuffle-Exchange Networks for Fast Processing of Long Sequences. Proceedings of the AAAI Conference on Artificial Intelligence, 35(8), 7245-7253. (Web of Science) link ISBN: 978-1-57735-866-4 Grant: lzp-2018/1-0327
  • E. Rencis. Application of a Configurable Keywords-Based Query Language to the Healthcare Domain. In Journal of Advances in Information Technology (JAIT, ISSN: 1798-2340), May 2021, Vol. 12, No. 2, pp. 142-147. (SCOPUS). ISSN: 17982340 DOI, link Grant: 1.1.1.2/VIAA/1/16/218
  • K. Čerāns, J. Ovčiņņikova, M. Grasmanis, L. Lāce, A. Romāne. Visual Presentation of SPARQL Queries in ViziQuer. In Proc. of VOILA! 2021, CEUR Workshop Proceedings Vol. 3023, pp. 29-40., (SCOPUS). ISSN: 1613-0073 link
  • E. Kalnina, D. Kosarevskis, A. Sostaks. Find-replace as a service of graph-based DSL tool development framework. In Proceedings of the 1st International Workshop on Foundations and Practice of Visual Modeling, Bergen, 22 June, 2021 co-located with STAF 2021, CEUR Workshop Proceedings Vol. 2999, pp. 65-76. (SCOPUS) ISSN: 1613-0073 link
  • G. Melkus, K. Cerans, K. Freivalds, L. Lace, D. Rituma, J. Viksna. Analysis of dynamics and stability of hybrid system models of gene regulatory networks. ACM International Conference Proceeding Series, CSBio2021: The 12th International Conference on Computational Systems-Biology and Bioinformatics, October 2021, pp. 1-10. To be indexed by SCOPUS. ISBN: 978-1-4503-8510-7 DOI, link

Posters in International Conferences

  • J. Viksna, K. Cerans, K. Freivalds, L. Lace, G. Melkus, D. Zajakina. Analysis of dynamics and stability of hybrid system models of gene regulatory networks. ISMB/ECCB 2021, NetBio COSI, July 25-30 2021. Grant: LZP-2019/1-0432
  • G. Melkus, L. Lace, K. Cerans, D. Zajakina, K. Freivalds, J. Viksna. Topological analysis of phage regulatory networks in hybrid system models: what can we learn? ISMB/ECCB 2021, SysMod COSI, July 25–30 2021. Grant: LZP-2019/1-0432
  • J. Viksna, K. Cerans, K. Freivalds, L. Lace, G. Melkus, D. Zajakina. Hybrid gene regulation models of circadian cycles. RECOMB 2021, August 29 – September 1, 2021. Grant: LZP-2019/1-0432
  • G. Melkus, K. Cerans, K. Freivalds, L. Lace, D. Rituma, J. Viksna. Analysis of dynamics and stability of hybrid system models of gene regulatory networks. The 12th International Conference on Computational Systems-Biology and Bioinformatics CSBio2021, (Virtual), October 2021.

Publications in the Annual Conference of the University of Latvia

  • E. Celms, K. Čerāns, K. Freivalds, P. Ķikusts, L. Lāce, G. Melkus, M. Opmanis, D. Rituma, P. Ručevskis, J. Vīksna. "Applications of graph-based modelling and analysis methods in systems biology." Referāts LU 79. konferencē, Plenārsēde. Inovatīvas informācijas tehnoloģijas. 2021. gada 5. februāris. link
  • G. Melkus. "Bakteriofāgu regulatoro tīklu analīze ar hibrīdiem modeļiem." Referāts LU 79. konferencē, Sekcijas sēde "Datorzinātne un informācijas tehnoloģijas." 2021. gada 12. februāris. link
  • A. Sproģis, G. Bārzdiņš, J. Bārzdiņš, A. Kalniņš, S. Rikačovs, E. Celms, M. Grasmanis. "Dziļās mašīnmācīšanās modeļi un to dzīves cikla pārvaldības ietvars multimediju datu apstrādei." Referāts LU 79. konferencē, Sekcijas sēde "Datorzinātne un informācijas tehnoloģijas." 2021. gada 12. februāris. link
  • E. Ozoliņš, S. Kozlovičs, A. Draguns, E. Gaile, R. Zakovskis, K. Freivalds. "Mērķa-virzīta neironu tīklu arhitektūra SAT risināšanai." Referāts LU 79. konferencē, Sekcijas sēde "Datorzinātne un informācijas tehnoloģijas." 2021. gada 12. februāris. link
  • R. Zakovskis, E. Ozoliņš, A. Draguns, E. Gaile, K. Freivalds. "Efektīvas rekurentā neironu tīkla šūnas izstrāde." Referāts LU 79. konferencē, Sekcijas sēde "Datorzinātne un informācijas tehnoloģijas." 2021. gada 12. februāris. link
  • E. Gaile, A. Draguns, E. Ozoliņš, R. Zakovskis, K. Freivalds. "Ceļojošā tirgotāja problēmas tuvināta risināšana ar neironu tīkliem." Referāts LU 79. konferencē, Sekcijas sēde "Datorzinātne un informācijas tehnoloģijas." 2021. gada 12. februāris. link
  • E. Kalniņa. "Concrete syntax-based find for graph-based modeling languages." Referāts LU 79. konferencē, Sekcijas sēde "Matemātisko metožu pētījumu izcilībai." 2021. gada 29. janvāris. link

Other publications

  • K. Sergejs A Web-Based Operating System for Integrating Heterogeneous Data and Code Using Semantic Web Technologies as Interlingua. The European Data Conference on Reference Data and Semantics (ENDORSE 2021), Virtual event, 16-19 March 2021, Luxembourg: Publications Office of the European Union, 2021 ISBN: 978-92-78-42492-3 DOI, link Grant: 1.1.1.2/VIAA/1/16/214

Preprints

  • E. Ozolins, K. Freivalds, A. Draguns, E. Gaile, R. Zakovskis, S. Kozlovics. Goal-Aware Neural SAT Solver. arXiv preprint arXiv:2106.07162 link
  • R. Zakovskis, A. Draguns, E. Gaile, E. Ozolins, K. Freivalds. Gates are not what you need in RNNs. arXiv preprint arXiv:2108.00527 link

Teaching materials

  • M. Opmanis, R. Opmanis, P. Pakalns, J. Vihrovs, N. Vilciņš. Informātikas (programmēšanas) olimpiāžu uzdevumu un to risinājumu krājums (2017.-2020. gads). Valsts izglītības satura centrs, 2021. ISBN 978-9934-24-033-1
  • M. Avotiņa, M. Opmanis, R. Opmanis, M. Valdats, A. Zīlīte. Matemātikas olimpiāžu uzdevumu un to risinājumu krājums (2017.-2020. gads). Valsts izglītības satura centrs, 2021. ISBN 978-9934-24-032-4
  • V. Detlovs, K. Podnieks. Introduction to Mathematical Logic, Edition 2021. Textbook for students, 2000–2021, 261 pp. link

2020

Indexed, Peer-Reviewed Publications

  • M. P. Barzine (EMBL-EBI), K. Freivalds, J. C. Wright (Institute of Cancer Research, London), M. Opmanis, D. Rituma, F. Z. Ghavidel (University of Bergen), A. F. Jarnuczak (EMBL-EBI), E. Celms, K. Čerāns, I. Jonassen (University of Bergen), L. Lace, J. A. Vizcaíno (EMBL-EBI), J. S. Choudhary (Institute of Cancer Research, London), A. Brazma (EMBL-EBI), J. Viksna. Using Deep Learning to Extrapolate Protein Expression Measurements. Proteomics journal, Volume 20, Issue 21-22, November 2020, Article number 2000009. (SCOPUS, Web of Science) DOI, link
  • J. Ovčiņņikova. Ontology export patterns in OWLGrEd Editor. Baltic Journal of Modern Computing, Volume 8, Issue 3, 2020, Pages 444-460. (SCOPUS) DOI, link
  • G. Barzdins, D. Gosko, K. Cerans, O. F. Barzdins, A. Znotins, P. F. Barzdins, N. Gruzitis, M. Grasmanis, J. Barzdins, U. Lavrinovics, S. K. Mayer, I. Students, E. Celms, A. Sprogis, G. Nespore-Berzkalne, P. Paikens. Pini Language and PiniTree Ontology Editor: Annotation and Verbalisation for Atomised Journalism. Lecture Notes in Computer Science, Volume 12124 LNCS, 2020, Pages 32-38. Extended Semantic Web Conference, ESWC 2020. (SCOPUS) DOI, link
  • P. Barzdins, E. Celms, J. Barzdins, A. Kalnins, A. Sprogis, M. Grasmanis, S. Rikacovs. Metamodel specialization based DSL for DL lifecycle data management. MODELS '20: Proceedings of the 23rd ACM/IEEE International Conference on Model Driven Engineering Languages and Systems: Companion Proceedings, October 2020 Article No.: 16. (SCOPUS) DOI, link
  • E. Kalniņa. Concrete syntax-based find for graphical DSLs. MODELS '20: Proceedings of the 23rd ACM/IEEE International Conference on Model Driven Engineering Languages and Systems: Companion Proceedings, October 2020 Article No.: 11. (SCOPUS) DOI, link
  • S. Kozlovičs. webAppOS: Creating the Illusion of a Single Computer for Web Application Developers. Lecture Notes in Business Information Processing (LNBIP), Volume 399, 2020, Pages 1-21, 15th International Conference on Web Information Systems and Technologies, WEBIST 2019. (SCOPUS) DOI, link
  • M.H. Bailey, W.U. Meyerson, L.J. Dursi, (...) J. Vīksna (...) M. J. van de Vijver, L. van’t Veer, C. von Mering. Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications. Volume 11, Issue 1, 1 December 2020, Article number 4748. (SCOPUS) DOI, link
  • V. Amaral, B. Norberto, M. Goulão, M. Aldinucci, S. Benkner, A. Bracciali, P. Carreira, E. Celms, L. Correia, C. Grelck, H. Karatza, C. Kessler, P. Kilpatrick, H. Martiniano, I. Mavridis, S. Pllana, A. Respício, J. Simão, L. Veiga, A. Visa. Programming languages for data-Intensive HPC applications: A systematic mapping study. Parallel Computing journal, Volume 91, March 2020, Article number 102584. (SCOPUS, Web of Science) DOI, link
  • The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (incl. Juris Viksna) Pan-cancer analysis of whole genomes. Nature, vol. 578, 2020, pp.82-93. (SCOPUS, Web of Science) DOI, link
  • G. Melkus, P. Rucevskis, E. Celms, K. Čerāns, K. Freivalds, P. Kikusts, L. Lace, M. Opmanis, D. Rituma, J. Viksna. Network motif-based analysis of regulatory patterns in paralogous gene pairs. Journal of Bioinformatics and Computational Biology, Volume 18, Issue 3, 2020, Article number 2040008, (SCOPUS, Web of Science) DOI, link
  • C. H. Li, s. D. Prokopec, R. X. Sun, J. Viksna, et al. Sex differences in oncogenic mutational processes. Nature Communications, Volume 11, Article number 4330 (2020), (SCOPUS) DOI, link
  • E. Celms, J. Barzdins, A. Kalnins, A. Sprogis, M. Grasmanis, S. Rikacovs. Towards DSL for DL Lifecycle Data Management. Communications in Computer and Information Science, Volume 1243 CCIS, 2020, Pages 205-218, 14th International Baltic Conference on Databases and Information Systems, DB and IS 2020, Tallinn, Estonia, 2020. (SCOPUS) DOI, link
  • I. J. Pretkalnins, A. Sprogis, G. Barzdins. Text Extraction from Scrolling News Tickers. Communications in Computer and Information Science, Volume 1243 CCIS, 2020, Pages 130-143, 14th International Baltic Conference on Databases and Information Systems, DB and IS 2020, Tallinn, Estonia, 2020. (SCOPUS) DOI, link
  • I. Arhipova, G. Berzins, E. Brekis, J. Binde, M. Opmanis, A. Erglis, E. Ansonska. Mobile phone data statistics as a dynamic proxy indicator in assessing regional economic activity and human commuting patterns. Wiley Online Library, Expert Systems (2020), Article number e12530. (SCOPUS, Web of Science) DOI, link
  • L. Lace, G. Melkus, P. Rucevskis, E. Celms, K. Čerāns, P. Kikusts, M. Opmanis, D. Rituma, J. Viksna. Characteristic Topological Features of Promoter Capture Hi-C Interaction Networks.
    Communications in Computer and Information Science, Volume 1211 CCIS, 2020, Pages 192-215, 12th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2019, Prague, Czech. (SCOPUS)     DOI, link
  • E.Rencis. Knowledge Extraction from Healthcare Data Using User-Adaptable Keywords-Based Query Language. ACM Proceedings of the 2020 the 4th International Conference on Information System and Data Mining, ICISDM 2020, May 2020, Hilo, Hawaii, USA, Pages 128–131. (SCOPUS) DOI, link
  • G. Melkus, P. Rucevskis, E. Celms, K. Čerāns, K. Freivalds, P. Kikusts, L. Lāce, M. Opmanis, D. Rituma, J. Vīksna. Graph-based network analysis of transcriptional regulation pattern divergence in duplicated yeast gene pairs. ACM International Conference Proceeding Series, 10th International Conference on Computational Systems-Biology and Bioinformatics, CSBIO 2019, Nice, France. (SCOPUS) DOI, link

Posters in International Conferences

  • J. Viksna, G. Melkus, E. Celms, K. Čerāns, K. Freivalds, P. Kikusts, L. Lace, M. Opmanis, D. Rituma, P. Rucevskis. Topological features of chromatin interaction networks. RECOMB’2020, The 24th Annual International Conference on Research in Computational Molecular Biology, June 22-25, 2020, Virtual Conference. Fiera di Padova, Italy.

Publications in the Annual Conference of the University of Latvia

  • A. Šostaks, A. Sproģis, S. Rikačovs, E. Celms, A. Kalniņš, M. Siliņa. "Baltic Large Scale Computing - pieejama skaitļošana", Referāts LU 78. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2020. gada 7. februāris.
  • E. Ozoliņš, A. Draguns, K. Freivalds, A. Šostaks, M. Apinis. "Neironu tīklu arhitektūras garu virkņu apstrādei”, Referāts LU 78. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2020. gada 7. februāris.

2019

Indexed, Peer-Reviewed Publications

  • A. Kalnins, J. Barzdins. Metamodel specialization for graphical language support. Software and Systems Modeling, Volume 18, Issue 3, 1 June 2019, Pages 1699-1735. (SCOPUS, Web of Science) DOI, link
  • K. Freivalds, E. Ozoliņš, A. Šostaks. Neural Shuffle-Exchange Networks - Sequence Processing in O(n log n) Time. Advances in Neural Information Processing Systems, Proceedings of the conference “Neural Information Processing Systems 2019 (NeurIPS 2019), Vancouver, Canada. (SCOPUS, Web of Science) link
  • E. Kalniņa, A. Šostaks. Towards concrete syntax based find for graphical domain specific languages. Proceedings of 2019 ACM/IEEE 22nd International Conference on Model Driven Engineering Languages and Systems Companion, MODELS-C 2019, September 2019, Article number 8904770, pp. 236-242. (SCOPUS) DOI, link
  • K. Čerāns, J. Ovčiņņikova, L. Lāce, J. Hodakovska, A. Romāne, M. Grasmanis, E. Kalniņa, A. Sproģis, A. Šostaks. Visual query environment over RDF data. CEUR Workshop Proceedings, Volume 2451, 2019, 15th International Conference on Semantic Systems, SEMPDS 2019. (SCOPUS) link
  • K. Čerāns, L. Lāce, A. Romāne, J. Ovčiņņikova, M. Grasmanis, A. Sproģis, A. Šostaks. Schema-Based Visual Queries over Linked Data Endpoints. Communications in Computer and Information Science, Volume 1057 CCIS, 2019, pp. 200-206, 13th International Conference on Metadata and Semantic Research, MTSR 2019. (SCOPUS) DOI, link
  • K. Čerāns, J. Ovčiņņikova, R. Liepiņš, M. Grasmanis. Extensible Visualizations of Ontologies in OWLGrEd. Lecture Notes in Computer Science, Volume 11762 LNCS, 2019, pp. 191-196, 16th Extended Semantic Web Conference, ESWC 2019. (SCOPUS) DOI, link
  • J. Viksna, G. Melkus, E. Celms, K. Čerāns, K. Freivalds, P. Kikusts, L. Lace, M. Opmanis, D. Rituma, P. Rucevskis. Topological structure analysis of chromatin interaction networks. BMC bioinformatics, Volume 20, 27 December 2019, Article number 618. (SCOPUS, Web of Science) DOI, link
  • K. Čerāns, G. Būmans. RDB2OWL: A Language for Database to OWL Mapping and its Implementation. Baltic Journal of Modern Computing, 2019, Volume 7, Issue 4, pp.475-486. (Web of Science) DOI, link
  • U. Bojārs, R. Darģis, U. Lavrinovičs (LETA), P. Paikens. LinkedSaeima: A Linked Open Dataset of Latvia’s Parliamentary Debates. Lecture Notes in Computer Science, Volume 11702 LNCS, 2019, 15th International Conference on Semantic Systems, SEMANTiCS 2019, pp. 50-56. (SCOPUS) DOI, link
  • E. Rencis User Experience-based Information Retrieval from Semistar Data Ontologies. IC3K 2019 - Proceedings of the 11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management Volume 1, 2019, pp 419-426. (SCOPUS) DOI, link
  • G. Barzdins, D. Gosko, P. Barzdins, U. Lavrinovics (LETA), G. Bernans (LETA), E. Celms. RDF* Graph Database as Interlingua for the TextWorld Challenge. IEEE Conference on Computational Intelligence and Games, CIG Volume 2019-August, August 2019, Article number 8848012. (SCOPUS) DOI, link
  • K. Čerāns, L. Lāce, A. Romāne, J. Ovčiņņikova, S. Kozlovičs, M. Grasmanis, J. Hodakovska, A. Sproģis, A. Šostaks. Visual Queries over Scholarly Data and other Linked Data Endpoints. Poster & Demo Track of ISWC 2019. CEUR Workshop Proceedings 2456, pp. 297-300, 2019. (SCOPUS) link
  • S. Kozlovičs. Towards an Extensible Web-Based Open-Source Graphical Ontology Editing Framework. Poster & Demo Track of ISWC 2019. CEUR Workshop Proceedings 2456, pp. 157-160, 2019. (SCOPUS) link
  • S. Kozlovičs. The web computer and its operating system: A new approach for creating web applications. WEBIST 2019 - Proceedings of the 15th International Conference on Web Information Systems and Technologies, Vol.1, SciTePress, pp.46-57, 2019. (SCOPUS) link
  • D. Ruklisa, A. Brazma, K. Čerāns, T. Schlitt, J. Vīksna. Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters - The case of phage λ. Journal "BMC Bioinformatics", Volume 20, Issue 1, 31 May 2019, Article number 296. (SCOPUS, WebOfScience) DOI, link
  • M.Opmanis. About Correctness of Graph-Based Social Network Analysis. Baltic Journal of Modern Computing (BJMC), Volume: 7 Issue: 2 Pages: 271-292. (SCOPUS, WebOfScience) DOI, link
  • L. Lace, G. Melkus, P. Rucevskis, E. Celms, K. Cerans, P. Kikusts, M. Opmanis, D. Rituma, J. Viksna. Graph-based characterisations of cell types and functionally related modules in promoter capture Hi-C Data. BIOINFORMATICS 2019 - Part of 12th International Joint Conference on Biomedical Engineering Systems and Technologies, Proceedings, BIOSTEC 2019; Prague; Czech Republic; February 22 - 24, 2019. (SCOPUS) DOI, link
  • K. Čerāns, A. Šostaks, U. Bojārs, Ju. Bārzdiņš, J. Ovčiņņikova, L. Lāce, M. Grasmanis, A. Sproģis. ViziQuer: A Visual Notation for RDF Data Analysis Queries. Communications in Computer and Information Science. Volume 846, 2019, Pages 50-62.(SCOPUS) DOI, link
  • E. Rencis. Natural language-based knowledge extraction in healthcare domain. ACM International Conference Proceeding Series, 6 April 2019, Pages 138-142. Proc. of the 3rd International Conference on Information System and Data Mining, ICISDM, April 6-8, 2019, Houston, Texas, USA. (SCOPUS, WebOfScience) DOI, link
  • I. Arhipova, G. Bērziņš, E. Brēķis, J. Binde, M. Opmanis. Mobile phone data statistics as proxy indicator for regional economic activity assessment. FEMIB 2019 - 1st International Conference on Finance, Economics, Management and IT Business 2019, Pages 27-36. 1st International Conference on Finance, Economics, Management and IT Business, FEMIB 2019; Heraklion, Crete; Greece; 3 May 2019 through 5 May 2019. (SCOPUS) DOI, link
  • I. Arhipova, G. Bērziņš, E. Brēķis, M. Opmanis, J. Binde, J. Kravcova, I. Šteinbuka. Pattern identification by factor analysis for regions with similar economic activity based on mobile communication data. Advances in Intelligent Systems and Computing, Volume 886, 2019, Pages 561-569. Future of Information and Communication Conference, FICC 2018; Singapore. (SCOPUS) DOI, link
  • S. Kozlovičs. Fast model repository as memory for web applications. Frontiers in Artificial Intelligence and Applications, Volume 315, 2019, Pages 176-191. Selected papers of 13th International Baltic Conference on Databases and Information Systems, DB and IS 2018, Trakai, Lithuania; July 1 - 4, 2018 (SCOPUS) DOI, link

Posters in International Conferences

  • G. Melkus, P. Rucevskis, E. Celms, K. Cerans, P. Kikusts, L. Lace, M. Opmanis, D. Rituma, J. Viksna.
    Topological structure analysis of Hi-C interaction graphs.
    ISMB/ECCB 2019 (Joint 27th Conference on Intelligent Systems for molecular Biology and 18th European Conference on Computational Biology), 21-25 July 2019, Basel, Switzerland.
  • G. Melkus, P. Rucevskis, E. Celms, K. Cerans, K. Freivalds, P. Kikusts, L. Lace, M. Opmanis, D. Rituma, J. Viksna.
    Graph-based network analysis of transcriptional regulation pattern divergence in duplicated yeast gene pairs.
    ISMB/ECCB 2019 (Joint 27th Conference on Intelligent Systems for molecular Biology and 18th European Conference on Computational Biology), 21-25 July 2019, Basel, Switzerland.

Publications in the Annual Conference of the University of Latvia

  • S. Kozlovičs. “Operētājsistēma tīmekļa lietotnēm”, Referāts LU 77. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2019. gada 1. februāris.
  • J. Ovčiņņikova. “Vizuālo vaicājumu translācija”, Referāts LU 77. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2019. gada 1. februāris.
  • G. Melkus, L. Lāce, P. Ručevskis, J. Vīksna. “Graph-Based Characterisations of Cell Types and Functionally Related Modules in Promoter Capture Hi-C Data”, Referāts LU 77. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2019. gada 1. februāris.

2018

Indexed, Peer-Reviewed Publications

  • E. Rencis, J. Barzdins, M. Grasmanis, A. Sostaks. Facilitation of Health Professionals Responsible Autonomy with Easy-To-Use Hospital Data Querying Language. Communications in Computer and Information Science, Volume 838, 2018, Pages 202-215. 13th International Baltic Conference on Databases and Information Systems, DB and IS 2018, Trakai, Lithuania, July 2018. (SCOPUS) DOI, link
  • A. Sprogis, K. Freivalds, E. Cirule. Implementing a face recognition system for media companies. Communications in Computer and Information Science, Volume 838, 2018, Pages 328-341. 13th International Baltic Conference on Databases and Information Systems, DB and IS 2018, Trakai, Lithuania, July 2018. (SCOPUS) DOI, link
  • S. Kozlovičs. Efficient Model Repository for Web Applications. Communications in Computer and Information Science, Volume 838, 2018, Pages 216-230. 13th International Baltic Conference on Databases and Information Systems, DB and IS 2018, Trakai, Lithuania, July 2018. (SCOPUS) DOI, link
  • E. Celms, K. Čerāns, K. Freivalds, P. Ķikusts, L. Lāce, G. Melkus, M. Opmanis, D. Rituma, P. Ručevskis, J. Vīksna. Application of graph clustering and visualisation methods to analysis of biomolecular data. Communications in Computer and Information Science, Volume 838, 2018, Pages 243-257. 13th International Baltic Conference on Databases and Information Systems, DB and IS 2018, Trakai, Lithuania, July 2018. (SCOPUS) DOI, link
  • E. Rencis. Towards a Natural Language-Based Interface for Querying Hospital Data. ACM International Conference Proceeding Series, Proceedings of 2018 International Conference on Big Data Technologies, ICBDT’18, Hangzhou, China, pp. 25-28, 2018. ISBN: 978-145036427-0 (SCOPUS) DOI, link
  • K. Čerāns, A. Sostaks, U. Bojars, J. Ovcinnikova, L. Lace, M. Grasmanis, A. Romane, A. Sprogis, J. Barzdins. ViziQuer: a Web-based Tool for Visual Diagrammatic Queries over RDF Data. Lecture Notes in Computer Science (LNCS), Volume 11155 LNCS, 2018, Pages 158-163. 15th Extended Semantic Web Conference, ESWC 2018; Heraklion; Greece; June, 2018 (SCOPUS) DOI, link
  • K. M. Briedis, K. Freivalds. On-line Television Stream Classification by Genre. Baltic Journal of Modern Computing, Vol. 6 (2018), No. 3, pp. 235–246. (WebOfScience) DOI, link
  • K. Podnieks. Philosophy of Modeling: Neglected Pages of History. Baltic Journal of Modern Computing, Vol. 6 (2018), No. 3, pp. 279–303. (WebOfScience) DOI, link
  • R. Opmanis. Optical Graph Edge Recognition. VISIGRAPP 2018, Proceedings of the 13th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications, Volume 3: IVAPP, pp. 184-191, Funchal, Madeira – Portugal, January 27 - 29, 2018. ISBN: 978-989-758-289-9 (SCOPUS) DOI, link
  • K. Freivalds, R. Liepins. Improving the Neural GPU Architecture for Algorithm Learning. A Federated Artificial Intelligence Meeting (FAIM) - International Conference on Machine Learning (ICML), Neural Abstract Machines & Program Induction Workshop (NAMPI). Stockholm, Sweden, 2018. (BEST PAPER AWARD)
  • M.Zviedris. Readable Diagrammatic Query Language ViziQuer. Information Retrieval and Management: Concepts, Methodologies, Tools, and Applications Volume 3, 5 January 2018, Pages 1389-1408 ISBN: 978-152255192-8;1522551913;978-152255191-1 (SCOPUS) DOI,link
  • E.Rencis. On Keyword-Based Ad-Hoc Querying of Hospital Data Stored in Semistar Data Ontologies. International Conference on Health and Social Care Information Systems and Technologies, Procedia Computer Science Journal, ISSN 1877-0509, Vol. 138, pp. 27-32, 2018. (SCOPUS) DOI,link
  • A.Tatarinov, V.Nikulenkov, P.Kikusts, A.Kochubey. Intelligent system for electrical heating control based on optical precipitation sensor. International Scientific Conference on Environmental and Climate Technologies, CONECT 2018; Riga; Latvia; 16 May 16-18, 2018.Energy Procedia. Vol.147, 2018, pp. 525-530. ISSN: 18766102 (SCOPUS) DOI, link

Posters in International Conferences

  • M. Barzine, A. Brazma, E. Celms, K. Čerāns, J. Choudhary, N. Fonseca, K. Freivalds, F. Ghavidel, A. Jarnuczak, L. Lace, D. Rituma, J. Viksna. Using Deep Learning for prediction of protein abundance from RNA concentrations and Gene Ontology annotations RECOMB’2018, The 22nd Annual International Conference on Research in Computational Molecular Biology, 21-24 April 2018, Paris, France
  • J. Viksna, M. Barzine, A. Brazma, E. Celms, K. Cerans, J. Choudhary, N. Fonseca, K. Freivalds, F. Ghavidel, A. Jarnuczak, L. Lace, D. Rituma. An integrated approach to missing data imputation in quantitative proteomics experiments. ECCB’2018, 17th European Conference on Computational Biology, 8 – 12 September, 2018, Athens, Greece.
  • P. Ručevskis, M. Opmanis, P. Ķikusts, E. Celms, L. Lāce, G. Melkus, J. Viksna and D. Rukliša. Predicting functionally related modules in promoter capture Hi-C data. ECCB’2018, 17th European Conference on Computational Biology, 8 – 12 September, 2018, Athens, Greece.

Publications in the Annual Conference of the University of Latvia

  • J. Vīksna, E. Celms, K. Čerāns, K. Freivalds, P. Ķikusts, L. Lāce, M. Opmanis, K. Podnieks, D. Rituma, P. Ručevskis, D. Rukliša. "Proteīnu koncentrāciju prognozēšana dažādu tipu audos", Referāts LU 76. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2018. gada 16. februāris.
  • K. Podnieks. "Ko modeļ-bāzētā izziņas modelī nozīmē izskaidrot un saprast?", Referāts LU 76. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2018. gada 23. februāris.
  • G. Bārzdiņš, D. Goško, R. Liepiņš. "No SUMMA līdz dBaby projektam”, Referāts LU 76. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2018. gada 1. marts.

2017

Indexed, Peer-Reviewed Publications

  • J. Glagoļevs, K. Freivalds. “Logo Detection in Images Using HOG and SIFT”, accepted to the 5th IEEE Workshop on Advances in Information, Electronic and Electrical Engineering (AIEEE’2017). ISBN: 978-1-5386-4137-8 (WebOfScience) link, DOI
  • K. Freivalds, J. Glagoļevs. A Statistical Method for Object Counting. Proceedings of the International Conference on Graphics and Signal Processing (ICDSP’2017), Singapore — June 24 - 27, 2017, pp. 61-64. (SCOPUS) link, DOI
  • K. Čerāns, Juris Bārzdiņš, A. Šostaks, J. Ovčiņņikova, L. Lāce, M. Grasmanis and A. Sproģis. Extended UML Class Diagram Constructs for Visual SPARQL Queries in ViziQuer/web. Proceedings of the Third International Workshop on Visualization and Interaction for Ontologies and Linked Data (VOILA '17), Vienna, Austria. CEUR Workshop Proceedings, vol. 1947, CEUR-WS.org, 2017.pp 87-98. (SCOPUS) link, ISSN: 16130073

Publications in the Annual Conference of the University of Latvia

  • K. Čerāns. Kas nosaka perspektīvu? Referāts LU 75. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas – nākotnes vīzijas”, 2017. gada 23. janvāris
  • A. Kalniņš, J. Bārzdiņš. Metamodeļu specializācija – jauns veids, kā definēt DSL valodas un rīkus. Referāts LU 75. konferencē, Plenārsēde “Inovatīvas informācijas tehnoloģijas”, 2017. gada 10. februāris.
  • K. Čerāns, U. Bojārs, M. Grasmanis, N. Grūzītis, J. Hodakovska, E. Kalniņa, L. Lāce, J. Ovčiņņikova, P. Ručevskis, A. Sproģis, A. Šostaks. Vizuālie vaicājumi semantiskajās datubāzēs: problēmas un risinājumi. Referāts LU 75. konferencē, Plenārsēde “Inovatīvas informācijas tehnoloģijas”, 2017. gada 10. februāris.
  • K. Freivalds, R. Liepiņš. Algoritmu mācīšanās ar dziļajiem neironu tīkliem. Referāts LU 75. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas”, 2017. gada 24. februāris.
  • S. Kozlovičs. Džona fon Neimana arhitektūra tīmekļa videi. Referāts LU 75. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas”, 2017. gada 24. februāris.
  • K. Podnieks, P. Ručevskis. Kā Datorikas fakultātes pasniedzēji liek atzīmes: divi klasteri. Referāts LU 75. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas”, 2017. gada 24. februāris.
  • E. Celms. Programmēšanas mācīšana maģistra programmā: 15 gadu pieredze. Referāts LU 75. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas”, 2017. gada 24. februāris.

Teaching materials

  • P. Ķikusts.Taisnes nogriežņu telpiskas tīklveida konfigurācijas algoritmiska atpazīšana no stereopāra.Metodisks materiāls. Rīga, 2017 link
    Darba finansētājs – LR Valsts pētījumu programma "Nākamās paaudzes informācijas un komunikāciju tehnoloģiju (IKT) pētniecības valsts programma (NexIT)". Projekts Nr. 2, tēma 4 „Grafu teorija, attēlu un vizuālās informācijas apstrāde”, LU MII.

2016

Indexed, Peer-Reviewed Publications

  • K. Podnieks. Locally Constrained Ontologies. Baltic Journal of Modern Computing, Vol. 4 (2016), N 4, pp. 694–720 (WebOfScience).
  • S. Kozlovics. A Model-Driven Approach to Web Applications. Databases and Information Systems IX. Selected Papers from the Twelfth International Baltic Conference, DB&IS 2016. Frontiers in Artificial Intelligence and Applications, vol. 291, IOS Press, pp. 73-86, 2016. (SCOPUS, WebOfScience)
  • S. Kozlovics. Models and Model Transformations Within Web Applications. Proceedings of the 12th International Baltic Conference, DB&IS 2016, Riga, Latvia, July 4-6, 2016. Communications in Computer and Information Science, vol. 615, Springer International Publishing, 2016, pp. 53-67. (SCOPUS)
  • J.Viksna, D.Gilbert. Gene duplication models and reconstruction of gene regulatory network evolution from network structure. Baltic Journal of Modern Computing, vol. 4:5, 2016, pp.876-895.(WebOfScience) link, DOI
  • K. Čerāns, G. Būmans. Database to Ontology Mapping Patterns in RDB2OWL Lite. Proceedings of Baltic DB&IS 2016, Springer CCIS Series 615, pp. 35-49 (SCOPUS)
  • R. Liepins, U. Bojars, N. Gruzitis, K. Cerans, E. Celms. Towards Self-explanatory Ontology Visualizations with Contextual Verbalizations. Proceedings of Baltic DB&IS 2016, Springer CCIS Series 615, pp. 3-17 (SCOPUS)
  • U. Bojārs, R. Liepins, N. Gruzitis, K. Cerans, E. Celms. Extending OWL Ontology Visualizations with Interactive Contextual Verbalization. Proceedings of the Second International Workshop on Visualization and Interaction for Ontologies and Linked Data (VOILA '16), Kobe, Japan. CEUR Workshop Proceedings, vol. 1704, CEUR-WS.org, 2016, pp.5-16. (SCOPUS).
  • J. Ovčiņņikova, K. Čerāns. Advanced UML Style Visualization of OWL Ontologies. Proceedings of the Second International Workshop on Visualization and Interaction for Ontologies and Linked Data (VOILA '16), Kobe, Japan. CEUR Workshop Proceedings, vol. 1704, CEUR-WS.org, 2016, pp.136-142. (SCOPUS).
  • K. Čerāns, J. Ovčiņņikova. ViziQuer: Notation and Tool for Data Analysis SPARQL Queries. Proceedings of the Second International Workshop on Visualization and Interaction for Ontologies and Linked Data (VOILA '16), Kobe, Japan. CEUR Workshop Proceedings, vol. 1704, CEUR-WS.org, 2016, pp.151-159. (SCOPUS).
  • R. Liepins, N. Gruzitis, K. Cerans, J. Ovčiņņikova, U. Bojars, E. Celms. Adding Verbalization to Graphical Ontology Editor OWLGrEd. Databases and Information Systems IX, Selected Papers from the Twelfth International Baltic Conference, DB&IS 2016, Frontiers in Artificial Intelligence and Applications, Vol 291, IOS Press, pp.17-30, 2016 (SCOPUS, WebOfScience).
  • G. Būmans, K. Čerāns. Database to Ontology Mappings in RDB2OWL: Notation and Implementation. Databases and Information Systems IX, Selected Papers from the Twelfth International Baltic Conference, DB&IS 2016, Frontiers in Artificial Intelligence and Applications, Vol 291, IOS Press, pp.31-42, 2016. (SCOPUS, WebOfScience).
  • J. Barzdins, M. Grasmanis, E. Rencis, A. Sostaks, J. Barzdins. Ad-hoc Querying of Semistar Data Ontologies Using Controlled Natural Language. Frontiers in Artificial Intelligence and Applications, Vol. 291 (DOI: 10.3233/978-1-61499-714-6-3), Databases and Information Systems IX, IOS Press, pp. 3-16, 2016 (SCOPUS, WebOfScience).
  • J. Barzdins, M. Grasmanis, E. Rencis, A. Sostaks, A. Steinsbekk. Towards a more effective hospital: helping health professionals to learn from their own practice by developing an easy to use clinical processes querying language. International Conference on Health and Social Care Information Systems and Technologies, Procedia Computer Science Journal, Vol. 100 (DOI: 10.1016/j.procs.2016.09.188), pp. 498-506, 2016. (SCOPUS)
  • J. Barzdins, M. Grasmanis, E. Rencis, A. Sostaks, J. Barzdins. Self-service Ad-hoc Querying Using Controlled Natural Language. G. Arnicans et al. (Eds.): Proc. of the 12th International Baltic Conference, Baltic DB&IS, CCIS 615, pp. 18-34, 2016 (SCOPUS).
  • A. Kalnins, J. Barzdins. Metamodel Specialization for DSL Tool Building. Databases and Information Systems, DB&IS 2016 Proceedings, CCIS v. 615, Springer, pages 68-82, 2016 (SCOPUS)
  • R. Opmanis, P. Ķikusts, M. Opmanis. Visualization of Large-Scale Application Testing Results. Baltic Journal of Modern Computing, Vol. 4 (2016), No. 1, pp. 34–50 (WebOfScience)
  • E. Kalinicenko, M. Opmanis. Collecting, Processing and Maintaining IOI Statistics. OLYMPIADS IN INFORMATICS, ISSN 1822-7732, 2016, Vol. 10, pp. 161 – 176, DOI: 10.15388/ioi.2016.10 (SCOPUS)
  • R. Opmanis, P. Ķikusts, M. Opmanis. Root Cause Analysis of Large Scale Application Testing Results. INFORMATICA, ISSN 0868-4952, 2016, Vol. 27, No. 4, 819-842 (SCOPUS)
  • A. Kalnins, J. Barzdins. Metamodel Specialization for Diagram Editor Building, Databases and Information Systems IX, Selected Papers from DB&IS 2016, Frontiers in Artificial Intelligence and Applications, Vol. 291, IOS Press, pages 87-100, 2016 (SCOPUS, WebOfScience)
  • J. Barzdins, A. Kalnins, Metamodel Specialization for Graphical Language and Editor Definition, Baltic Journal of Modern Computing, Vol. 4 (2016), N 4, pp. 910-933 (WebOfScience)
  • A. Kalnins, E. Kalnina, A. Sostaks, E.Celms, I. Tabernakulovs, LINQ as Model Transformation Language Baltic Journal of Modern Computing, Vol. 4 (2016), N 4, pp. 934-964 (WebOfScience)
  • A. Kalnins, J. Barzdins, Metamodel Specialization for Graphical Modeling Language Support. In Proceedings of MODELS 2016, 19th ACM/IEEE International Conference on Model Driven Engineering Languages and Systems, ACM, pages 103-112, 2016.(SCOPUS) link, DOI
  • J. Viksna, K. Freivalds, M. Grasmanis, P. Rucevskis, B. Kaskina, V. Teivans. Network Security Incident Detection Based on Network Topology Patterns. In Proceedings of SECURWARE 2015, pp. 7-8.
  • A. Sprogis. DSML Tool Building platform in WEB Proceedings of the 12th International Baltic Conference, DB&IS 2016, Riga, Latvia, July 4-6, 2016. Communications in Computer and Information Science, vol. 615, Springer International Publishing, 2016. pp 99-109. (SCOPUS) link, DOI
  • A.Sprogis. ajoo: WEB Based Framework for Domain Specific Modeling Tools. Databases and Information Systems IX. Selected Papers from the Twelfth International Baltic Conference, DB&IS 2016. Frontiers in Artificial Intelligence and Applications, vol. 291, IOS Press, pp. 115-126, 2016. (SCOPUS, WebOfScience) link, DOI

Posters in International Conferences

  • A.Brazma, K.Cerans, D.Ruklisa, T.Schlitt, J.Viksna. Towards experimental validation of models of gene regulatory networks. 15th European Conference on Computational Biology, The Hague, Netherlands, September 2016. (Conference poster)
  • B.Halldorsson, J.Viksna. Generalized haplotype consistency problem and characterization of haplotype consistent graphs. Workshop on Algorithms in Bioinformatics WABI 2016, Aarhus, Denmark, August 2016. (Conference poster)

Publications in the Annual Conference of the University of Latvia

  • K. Podnieks. Reālisms bez mistikas: kā saskatīt patiesību modeļu mākonī. Referāts LU 74.konferencē, 2016.
  • J. Bārzdiņš, M. Grasmanis, E. Rencis, A. Šostaks. Uz ontoloģijām balstīta ātro vaicājumu valoda, tās iespējas un izaicinājumi. Referāts LU 74.konferencē, 2016.
  • E. Rencis, M. Grasmanis, Juris Bārzdiņš. Inovatīvs risinājums veselības aprūpes informācijas sistēmās uzkrāto datu izpētei. Referāts LU 74.konferencē, 2016.
  • G. Bārzdiņš, R. Liepiņš. Datorlingvistikas un lielo datu problēmas H2020 projektā SUMMA. Referāts LU 74.konferencē, 2016.
  • U. Bojārs, J. I. Jevdokimovs. DBPedia: izmantošanas iespējas un latviskās versijas izveide. Referāts LU 74.konferencē, 2016.
  • S. Kozlovičs, P. Ručevskis, E. Celms. Datu Galaktikas: tīmekļa bāzēta platforma datu transformācijām un vizualizācijām. Referāts LU 74.konferencē, 2016.
  • K. Čerāns, J. Ovčiņņikova, M. Zviedris. ViziQuer: diagrammatiska vaicājumu notācija un rīks pār semantiskajām datubāzēm. Referāts LU 74.konferencē, 2016.

2015

  • Santare D, Kojalo I, Huttunen T, Rikacovs S, Rucevskis P, Boka V, Leja M. Improving uptake of screening for colorectal cancer: a study on invitation strategies and different test kit use. (SCOPUS) European Journal of Gastroenterology & Hepatology. 27(5):536-543, May 2015. May 2015 - Volume 27 - Issue 5 - p 536–543 doi: 10.1097/MEG.0000000000000314 http://journals.lww.com/eurojgh/Abstract/2015/05000/Improving_uptake_of_screening_for_colorectal.9.aspx
  • Lelde Lace, Audris Kalnins, Agris Sostaks. Process DSL Transformation by Mappings Using Virtual Functional Views. Baltic Journal Modern Computing, Vol. 3 (2015), pp. 133 – 147 http://www.bjmc.lu.lv/fileadmin/user_upload/lu_portal/projekti/bjmc/Contents/3_2_4_Lace.pdf
  • J. Cernenoks, J. Iraids, M. Opmanis, R. Opmanis, K. Podnieks. Integer Complexity: Experimental and Analytical Results II. Proceedings of 17th International Workshop Descriptional Complexity of Formal Systems, DCFS 2015, Waterloo, Canada, June 25-27, 2015, Lecture Notes in Computer Science, Vol. 9118, Springer, 2015, pp. 58–69 (SCOPUS)
  • A.Brazma, K.Cerans, D.Ruklisa, T.Schlitt, J.Viksna. Modeling and analysis of qualitative behaviour of gene regulatory networks. (Proc. of HSB 2014, Lecture Notes of Computer Science, LNCS v.7699) (SCOPUS).
  • K. Podnieks. Fourteen Arguments in Favor of a Formalist Philosophy of Real Mathematics. Baltic J. Modern Computing, Vol. 3 (2015), No. 1, pp. 1–15. http://www.bjmc.lu.lv/fileadmin/user_upload/lu_portal/projekti/bjmc/Contents/3_1_1_Podnieks.pdf (Web of Science)
  • Martins Opmanis. Math Contests: Solutions without Solving, Olympiads in Informatics, 2015, Vol.9, pp.147-161. http://ioinformatics.org/oi/pdf/v9_2015_147_161.pdf (SCOPUS).
  • K. Čerāns, G.Būmans RDB2OWL: A Language and Tool for Database to Ontology Mapping In: Proc. of CAiSE FORUM 2015 http://ceur-ws.org/Vol-1367/paper-11.pdf (SCOPUS).
  • K. Čerāns, A. Romāne OBIS: Ontology-Based Information System Framework In: Proc. of CAiSE FORUM 2015 http://ceur-ws.org/Vol-1367/paper-09.pdf(SCOPUS).
  • K. Čerāns, J.Ovčiņņikova, M.Zviedris Towards graphical query notation for semantic databases In: Proc. of BIR 2015, Springer LNBIP 229, pp.273-281 (SCOPUS).
  • K. Čerāns, J.Ovčiņņikova, M.Zviedris SPARQL Aggregate Queries Made Easy with Diagrammatic Query Language ViziQuer In Proc. of ISWC 2015 PD http://ceur-ws.org/Vol-1486/paper_68.pdf (SCOPUS).
  • Karlis Cerans, Renars Liepins, Arturs Sprogis, Julija Ovcinnikova, and Guntis Barzdins Domain-Specific OWL Ontology Visualization with OWLGrEd In: ESWC 2012 Satellite Events, Springer LNCS, pp.419-424 (SCOPUS).

2014

  • G. Scelo, Y. Riazalhosseini, L. Greger, L. Letourneau, M. Gonzalez-Porta, M. B. Wozniak, M. Bourgey, P. Harnden, L. Egevad, S. M. Jackson, M. Karimzadeh, M. Arseneault, P. Lepage, A. How-Kit, A. Daunay, V. Renault, H. Blanche, E. Tubacher, J. Sehmoun, J. Viksna, E. Celms, M. Opmanis, A. Zarins et.al. Variation in genomic landscape of clear cell renal cell carcinoma across Europe. Journal article, Nature Communications vol. 5, Article number: 5135 doi:10.1038/ncomms6135, Published 29 October 2014, Nature Publishing Group, a division of Macmillan Publishers Limited. (Web of Science, Thomson Reuters)
  • E. Jakumeit, S. Buchwald, D. Wagelaar, L. Dan, Á. Hegedüs, M. Herrmannsdörfer, T. Horn, E. Kalnina, C. Krause, K. Lano, M. Lepper, A. Rensink, L. Rose, S. Wätzoldt, S. Mazanek. A survey and comparison of transformation tools based on the transformation tool contest. Science of Computer Programming, Elsevier, ISSN , Volume 85, Issue PART A, 2014, Pages 41-99. (SCOPUS)
  • L.M. Rose, M. Herrmannsdoerfer, S. Mazanek, P. Van Gorp, S. Buchwald, T. Horn, E. Kalnina, K. Lano, A. Koch, B. Schätz, M.Wimmer. Graph and model transformation tools for model migration. Empirical results from the transformation tool contest. Software and Systems Modeling, Springer Verlag, ISSN 1619-1366. Vol.13, Issue 1, 2014, pp.323-359. (SCOPUS)
  • S. Kozlovics and P. Rucevskis. Manipulating and Visualizing Data by Means of Data Galaxies. Frontiers in Artificial Intelligence and Applications, Vol. 270, Databases and Information Systems VIII, IOS Press, pp. 85-98, 2014. (SCOPUS)
  • J. Barzdins, E. Rencis and A. Sostaks. Fast Ad Hoc Queries Based on Data Ontologies. Frontiers in Artificial Intelligence and Applications, Vol. 270, Databases and Information Systems VIII, IOS Press, pp. 43-56, 2014 (SCOPUS).
  • M. Zviedris and R. Liepinš. Readability of a diagrammatic query language. In Proceedings of IEEE Symposium on Visual Languages and Human-Centric Computing, VL/HCC, 2014, pp. 227-228. (SCOPUS)
  • R. Liepins, M. Grasmanis and U. Bojars. OWLGrEd Ontology Visualizer. In Proceedings of the International Semantic Web Conference, Developers Workshop 2014 (ISWC-DEV’2014 ), CEUR-WS Vol-1268, pp 37 – 42. (SCOPUS)
  • J. Vihrovs, K. Prusis, K. Freivalds, P. Rucevskis and V. Krebs. An inverse distance-based potential field function for overlapping point set visualization. In proceedings of the 5th International Conference on Information Visualization Theory and Applications, IVAPP 2014; Lisbon; Portugal, 2014, pp 29–38. (SCOPUS)
  • K. Freivalds and J. Glagolevs. Graph Compact Orthogonal Layout Algorithm. In proceedings of the 3rd International Symposium on Combinatorial Optimization, ISCO 2014; Lisbon; Portugal, 2014. Volume 8596 LNCS, Springer International Publishing, pp. 255-266. (SCOPUS)
  • A.Kalnins, L.Lace, E.Kalnina, A.Sostaks. DSL Based Platform for Business Process Management. In: V. Geffert, B. Preneel, B. Rovan, J. Stuller, A Min Tjoa (Eds.), SOFSEM 2014: Theory and Practice of Computer Science - 40th International Conference on Current Trends in Theory and Practice of Computer Science, Nový Smokovec, Slovakia, January 26-29, 2014, Proceedings, Volume 8327, LNCS, Springer International Publishing, pp. 351-362 , 2014 (SCOPUS)
  • T. Tisenkopfs, I. Kunda, S. Sūmane. Learning as issue framing in agricultural innovation networks. The Journal of Agricultural Education and Extension. ISSN 1389-224X - Vol.20, N 3 : Facilitating change and innovation (2014), pp.309-326 (SCOPUS)
  • A. Kalnins, T. Straszak, M. Smialek, E. Kalnina, E. Celms and W. Nowakowski. Developing Software with Domain-Driven Model Reuse. Chapter in book “Handbook of Research on Innovations in Systems and Software Engineering”, V.G. Diaz, J.M.C. Lovelle and B.C.P. Garcia-Bustelo (Eds.), August’2014, IGI Global, ISBN13: 9781466663596, pp. 283-312. (SCOPUS)
  • K. Podnieks. The Dappled World Perspective Refined. The Reasoner, Vol. 8, N 1, January 2014, pp. 3-4.
  • J. Barzdins, E. Rencis and A. Sostaks. Data Ontologies and Ad Hoc Queries: a Case Study. In: Databases and Information Systems : Proceedings of the 11th International Baltic Conference, Baltic DB&IS 2014, Tallinn, Estonia, 8-11 June 2014, Tallinn University of Technology Press, pp. 55-66, 2014.
  • A. Sprogis. DSML tool definition metamodel, H.M. Haav, A. Kalja and T. Robal (Eds.), Databases and Information Systems : Proceedings of the 11th International Baltic Conference, Baltic DB&IS 2014, Tallinn, Estonia, 8-11 June 2014, Tallinn University of Technology Press, pp. 77 - 88. 2014.
  • L.Lace, A.Kalnins and A.Sostaks. Mappings for Process DSL Using Virtual Functional Views. In: H.M. Haav, A. Kalja, T. Robal (Eds.), Databases and Information Systems : Proceedings of the 11th International Baltic Conference, Baltic DB&IS 2014, Tallinn, Estonia, 8-11 June 2014, Tallinn University of Technology Press, pp. 371-378, 2014.
  • S. Kozlovics and P. Rucevskis. Data Galaxies: A Common Space for Data Manipulation and Visualization. In: H.M. Haav, A. Kalja, T. Robal (Eds.), Databases and Information Systems : Proceedings of the 11th International Baltic Conference, Baltic DB&IS 2014, Tallinn, Estonia, 8-11 June 2014, Tallinn University of Technology Press, pp. 235 - 246, 2014.
  • K. Cerans, G. Barzdins, G. Bumans, J. Ovcinnikova, S. Rikacovs and A. Romane, On Semantic Re-Engineering of Relational Databases. In: H.M. Haav, A. Kalja, T. Robal (Eds.), Databases and Information Systems : Proceedings of the 11th International Baltic Conference, Baltic DB&IS 2014, Tallinn, Estonia, 8-11 June 2014, Tallinn University of Technology Press, pp. 349 - 360, 2014.
  • U. Bojars and R. Liepinš. The State of Open Data in Latvia: 2014. Baltic Journal of Modern Computing (BJMC), Vol. 3 (2014), No. 3, pp. 160-170.
  • K. Cerans, G. Barzdins, G. Bumans, J. Ovcinnikova, S. Rikacovs, A. Romane and M. Zviedris. A Relational Database Semantic Re-Engineering Technology and Tools. Baltic Journal of Modern Computing (BJMC), Vol. 3 (2014), No. 3, pp. 183-198.
  • A. Sprogis. Configuration language for domain specific modeling tools and its implementation, Baltic Journal of Modern Computing (BJMC), Vol. 2 (2014), No. 2, pp. 56-74.
  • J.Ovčiņņikova, K.Čerāns, R.Liepiņš. Grammar based content completion method using Lua LPeg.re module. In Proceedings of 2014 IEEE 2nd Workshop on Advances in Information, Electronic and Electrical Engineering (AIEEE), Vilnius, Lithuania, November 28-29, IEEE Xplore Digital Library, 2014.

2013

  • J. Barzdins, E. Rencis, A. Sostaks. Towards Human-Executable Business Process Modeling. In A. Caplinskas et al. (Eds.). Frontiers of AI and Applications, Vol. 249, Databases and Information Systems VII, IOS Press, pp. 149-163, 2013. SCOPUS
  • J. Barzdins, J. Barzdins, E. Rencis, A. Sostaks. Modeling and Query Language for Hospitals. In: Huang, G.; Liu, X.; He, J.; Klawonn, F.; Yao, G. (Eds.), Health Information Science, Second International Conference, HIS 2013, London, UK, March 25-27, 2013. Proceedings, Volume 7798, LNCS, Springer Berlin / Heidelberg, pp. 113-124, 2013. SCOPUS
  • J. Barzdins, E. Rencis, A. Sostaks, Graphical Modeling and Query Language for Analyzing Clinical Processes. In: J. Zvárová, A. Schlenker, L. Seidl, P. Smrcka, M. Tomecková (Eds.), International Journal for Biomedicine and Healthcare, Volume 1, Issue 1, EuroMISE s.r.o, pp. 16, 2013.
  • J. Barzdins, J. Barzdins, E. Rencis, A. Sostaks, Model-Based Query Language For Analyzing Clinical Processes. In: Lehmann, C.U., Ammenwerth, E., Nøhr, C. (Eds.), Studies in health technology and informatics, Volume 192, IOS Press, pp. 1072, 2013. SCOPUS
  • J. Barzdins, J. Barzdins, E. Rencis and A. Sostaks, Graphical Modeling and Query Language for Hospitals. In: Y. Zhang, et. al. (Eds.), Health Information Science and Systems, 2013, 1:14, (4 November 2013), BioMed Central, http://www.hissjournal.com/content/1/1/14
  • J. Barzdins, E. Rencis, A. Sostaks, Granular Ontologies and Graphical In-Place Querying. In: J. Grabis, M. Kirikova, J. Zdravkovic, and J. Stirna (Eds.), Short Paper Proceedings of the 6th IFIP WG 8.1 Working Conference on the Practice of Enterprise Modeling (PoEM 2013), CEUR-WS Vol 1023, pp. 136-145, 2013
  • K. Cerans, R. Liepinš, J. Ovcinnikova, and A. Sprogis. Advanced OWL 2.0 Ontology Visualization in OWLGrEd. . In: A. Caplinskas et al. (Eds.). Frontiers of AI and Applications, Vol. 249, Databases and Information Systems VII, IOS Press, pp. 41-54, 2013. SCOPUS
  • A. Sprogis, J. Barzdins. Specification, Configuration and Implementation of DSL Tool. In: A. Caplinskas et al. (Eds.). Frontiers of AI and Applications, Vol. 249, Databases and Information Systems VII, IOS Press, pp. 330-343, 2013. SCOPUS
  • G.Arnicans, D.Romans and U.Straujums, Semi-automatic Generation of a Software Testing Lightweight Ontology from a Glossary Based on the ONTO6 Methodology. In: A. Caplinskas et al. (Eds.). Frontiers of AI and Applications, Vol. 249, Databases and Information Systems VII, IOS Press, pp. 263-276, 2013. SCOPUS
  • S. Kozlovics, The orchestra of multiple model repositories. In SOFSEM 2013: Theory and Practice of Computer Science, , Volume 7741, LNCS, Springer Berlin Heidelberg, pp. 503 -514, 2013. SCOPUS
  • G.Arnicans and U.Straujums, Transformation of the Software Testing Glossary into a Browsable Concept Map. In Innovations and Advances in Computer, Information, Systems Sciences, and Engineering, LNEE, 2013. (pienemts publicešanai) bus SCOPUS
  • S. Kozlovics and J. Barzdins, The Transformation-Driven Architecture for interactive systems. In: Automatic Control and Computer Sciences, vol. 47, no. 1/2013, Allerton Press, Inc., pp. 28- 37, 2013. SCOPUS
  • A. Brazma, K. Cerans, D. Ruklisa, T. Schlitt, J. Viksna. HSM — a hybrid system based approach for modelling intracellular networks // Proceedings of the 23rd International Conference on Genome Informatics (GIW 2012), Gene, Volume 518, Issue 1, 10 April 2013, pp.70–77 (Elsevier) SCOPUS
  • R. Kadikis, K. Freivalds. Vehicle classification in video using virtual detection lines. 6th International Conference on Machine Vision (ICMV 2013), Conference proceedings SPIE (International Society for Optics and Photonics), Volume 9067, 2013.
  • R. Kadikis, K. Freivalds. Efficient Video Processing Method for Traffic Monitoring Combining Motion Detection and Background Subtraction. Proceedings of the Fourth International Conference on Signal and Image Processing 2012 (ICSIP 2012) Lecture Notes in Electrical Engineering Volume 221, 2013, pp 131-141. SCOPUS
  • M. Zviedris, G. Barzdins, A. Romane, K. Cerans. Ontology-Based Information System. In: Proceedings of JIST 2013, LNCS, 2014 (pienemts publicešanai, bus SCOPUS)
  • S.Ose, J.Viksna. On WQO property for different quasi orderings of set of permutations. Proc. of MEMICS 2012, Lecture Notes in Computer Science, vol.7721, 2013, pp. 190-199. SCOPUS
  • M.Avotina, M.Opmanis. Matematikas sacensibas 9.-12.klasem 2011./2012.macibu gada. Riga: Latvijas Universitate, 2013. – 151 lpp., ISBN 978-9984-45-708-6
  • Martins Opmanis – Latvian Olympiads in Informatics – Lessons Learned, Olympiads in Informatics, 2013, Vol.7, pp.78-89. SCOPUS

2012

  • J.Iraids, K.Balodis, J.Cernenoks, M.Opmanis, R.Opmanis, K.Podnieks, Integer Complexity: Experimental and Analytical Results. In Scientific Papers, University of Latvia, volume 787, pp. 153-179, 2012
  • R. Liepinš. Library for Model Querying – lQuery. In Proceedings of 2012 Workshop on OCL and Textual Modelling, 2012. (http://st.inf.tu-dresden.de/OCL2012/preproceedings/01.pdf). SCOPUS
  • R. Liepinš, K. Cerans and A. Sprogis. Visualizing and Editing Ontology Fragments with OWLGrEd. In Proceedings of I-SEMANTICS Poster and Demo Track, 2012. (http://ceur-ws.org/Vol-932/paper5.pdf). SCOPUS
  • S. Kozlovics. Calculating The Layout For Dialog Windows Specified As Models. In Scientific Papers, University of Latvia, volume 787, pp. 106-124, 2012
  • K. Freivalds, P.Kikusts. Robust image topological feature extraction. Proceedings of Applied Information and Communication Technology AICT 2012. ISBN 978-9984-48-065-7, pp 82–91.(http://aict.itf.llu.lv/files/rakstkraj/2012/freivalds_aict2012.pdf)
  • K.Cerans, G.Barzdins, R.Liepins, J.Ovcinnikova, S.Rikacovs and A.Sprogis, Graphical Schema Editing for Stardog OWL/RDF Databases using OWLGrEd/S // Proc. of OWLED 2012, Heraklion, Greece, May 27-28, 2012. CEUR-WS Vol. 849, 8pp. (http://ceur-ws.org/Vol-849/paper_19.pdf). SCOPUS
  • L. Lace, R. Liepinš and E. Rencis Architecture and Language for Semantic Reduction of Domain-Specific Models in BPMS. In Perspectives in Business Informatics Research, LNBIP vol. 128, Springer, 2012, pp. 70-84. SCOPUS
  • R. Liepinš, J. Barzdinš and L. Lace. OWL Orthogonal Extension. In Perspectives in Business Informatics Research, LNBIP vol. 128, Springer, 2012, pp. 13-25. SCOPUS
  • E. Kalnina, A. Kalnins, A. Sostaks, E. Celms, J. Iraids. Tree Based Domain-Specific Mapping Languages. In: Mária Bieliková, Gerhard Friedrich, Georg Gottlob, Stefan Katzenbeisser and György Turán (Eds.), SOFSEM 2012: Theory and Practice of Computer Science, 38th Conference on Current Trends in Theory and Practice of Computer Science, Špindleruv Mlýn, Czech Republic, January 21-27, 2012. Proceedings, Volume 7147, LNCS, Springer Berlin / Heidelberg, pp. 492-504, 2012. (http://www.springerlink.com/content/an6701r338w4u8t4/). SCOPUS
  • K. Podnieks. Frege’s Puzzle from a Model-Based Point of View. The Reasoner, Vol. 6, N 1, January 2012, pp. 5-6.

2011

  • S. Kozlovics A universal model-based solution for describing and handling errors. In Proceedings of Perspectives in Business Informatics Research 2011, BIR 2011, vol. 90 of LNBIP, Springer, pp. 190-203, 2011 (http://www.springerlink.com/content/978-3-642-24511-4#section=968601&page=1). SCOPUS
  • E. Rencis, J. Barzdins, "On the Use of UML Stereotypes to Create Higher-Order Domain Specific Languages and Tools". Proceedings of MDA & MDSD’2011 Workshop of ENASE 2011, Beijing, China, pp. 14-25, 2011. SCOPUS
  • E. Rencis, J. Barzdins, and S. Kozlovics Towards open graphical tool-building framework, in Proceedings of BIR 2011, pp. 80-87, 2011.
  • R. Liepinš lQuery: A Model Query and Transformation Library. In Scientific Papers, University of Latvia, volume 770, pp. 27-45, 2011.
  • J. Barzdins, K. Cerans, R. Liepins and A. Sprogis Advanced ontology visualization with OWLGrEd. In: Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), San Francisco, CA, United States, June 5-6, 2011.SCOPUS
  • M.Zviedris, G. Barzdins "ViziQuer: A Tool to Explore and Query SPARQL Endpoints", The Semantic Web: Research and Applications, LNCS, 2011, Volume 6644/2011, pp. 441 - 445. SCOPUS
  • M.Opmanis, K.Cerans, Multilevel Data Repository for Ontological and Meta-Modeling // J.Barzdins and M.Kirikova (eds.), Databases and Information Systems VI, IOS Press 2011, p.125-138. SCOPUS
  • K.Cerans, G.Bumans, RDB2OWL: a RDB-to-RDF/OWL Mapping Specification Language // J.Barzdins and M.Kirikova (eds.), Databases and Information Systems VI, IOS Press 2011, p.139-152. SCOPUS
  • G.Bumans, K.Cerans, Advanced RDB-to-RDF/OWL mapping facilities in RDB2OWL // Proc. of BIR 2011, Riga, Latvia, October 7-8, 2011. LNBIP 90, pp. 142-157. Springer, Heidelberg, 2011 (ISBN:978-3-642-24510-7) SCOPUS
  • S. Rikacovs, Export of Relational Databases to RDF Databases by Model Transformations,// Proc. of BIR 2011, Riga, Latvia, October 7-8, 2010. LNBIP 90, pp. 158-166. Springer, Heidelberg, 2011 (ISBN:978-3-642-24510-7) SCOPUS
  • A. Kalnins, M. Smialek, E. Kalnina, E. Celms, W. Nowakowski, T. Straszak. Domain-Driven Reuse of Software Design Models. J.Osis, E.Asnina (Eds.), Model-Driven Domain Analysis and Software Development: Architectures and Functions, IGI Global, 2011, pp. 177-200.
  • A.Sostaks. Bringing Domain Knowledge to Pattern Matching. J.Barzdins, M.Kirikova (Eds.), Databases and Information Systems VI, Selected Papers from the Ninth International Baltic Conference, DB&IS 2010, Vol. 224, IOS Press, 2011, pp. 66-79. SCOPUS
  • J. Bicevskis, J.Cerina-Berzina, G. Karnitis, L.Lace, I.Medvedis, S.Nesterovs Practitioners View on Domain Specific Business Process Modeling Selected Papers from the Ninth International Baltic Conference, DB&IS 2010, Vol. 224, IOS Press, 2011, pp. 169 - 182. SCOPUS
  • A. Sostaks, E. Kalnina, A. Kalnins, E. Celms, J. Iraids. Solving the TTC 2011 Reengineering Case with MOLA and Higher-Order Transformations. In: P. Van Gorp, S. Mazanek, L.M. Rose (Eds.), Proceedings of the Fifth Transformation Tool Contest, Zürich, Switzerland, June , Electronic Proceedings in Theoretical Computer Science (EPTCS, Open Publishing Association), 2011, pp.159-167.
  • E. Kalnina, A. Kalnins, A. Sostaks, J. Iraids, E. Celms. Saying Hello World with MOLA - A Solution to the TTC 2011 Instructive Case. In: P. Van Gorp, S. Mazanek, L.M. Rose (Eds.), Proceedings of the Fifth Transformation Tool Contest, Zürich, Switzerland, June , Electronic Proceedings in Theoretical Computer Science (EPTCS, Open Publishing Association), 2011, pp. 236-251.
  • G.Nicholson, M.Rantalainen1, A.Maher, J.Li, D.Malmodin, K.Ahmadi, J.Faber, I.Hallgrímsdóttir1, A.Barrett, H.Toft, M.Krestyaninova, J.Viksna, S.Guha Neogi, M.E.Dumas, U.Sarkans, The MolPAGE Consortiumb, B.Silverman, P.Donnelly, J.Nicholson, M.Allen, K.Zondervan, J.Lindon, T.Spector, M.McCarthy, E.Holmes, D.Baunsgaard, C.Holmes. Human metabolic profiles are stably controlled by genetic and environmental variation. Molecular Systems Biology 7:525 doi:10.1038/msb.2011.57, 12p, 2011. SCOPUS
  • S. Kozlovics, E. Rencis, S. Rikacovs, and K. Cerans. A kernel-level UNDO/REDO mechanism for the Transformation-Driven Architecture. In Databases and Information Systems VI - Selected Papers from the Ninth International Baltic Conference, DB&IS 2010, pp.80-93, 2011. (http://www.booksonline.iospress.nl/Content/View.aspx?piid=19109) SCOPUS
  • K. Podnieks, J. Tabak. The Nature of Mathematics – an interview with Professor Karlis Podnieks. In: John Tabak. Numbers: Computers, Philosophers, and the Search for Meaning. Revised Edition. Facts on File, 2011, 243 pp. (Afterword, pp.188-197).

2010

  • S. Kozlovics, E. Rencis, S. Rikacovs, and K. Cerans Universal UNDO mechanism for the Transformation-Driven Architecture. In Proceeding of the Ninth International Baltic Conference, DB&IS 2010, pp. 325-340, 2010.
  • S. Kozlovics A Dialog Engine Metamodel for the Transformation-Driven Architecture. In Scientific Papers, University of Latvia, vol. 756, pp. 151-170, 2010.
  • J. Barzdins, K. Cerans, S. Kozlovics, E. Rencis, and A. Zarins A Graph Diagram Engine for the Transformation-Driven Architecture. In Scientific Papers, University of Latvia, pp. 139-149, 2010.
  • J. Barzdins, K. Cerans, S. Kozlovics, L. Lace, R. Liepins, E. Rencis,A. Sprogis, and A. Zarins MDE-based Graphical Tool Building Framework. In Scientific Papers, University of Latvia, pp. 121-138, 2010.
  • J.Barzdinš, G.Barzdinš, K.Cerans, R.Liepinš and A.Sprogis "UML Style Graphical Notation and Editor for OWL 2", Perspectives in Business Informatics Research, Lecture Notes in Business Information Processing, Vol. 64, Part 2, Springer, 2010, pp.102-114. (http://www.springerlink.com/content/p780260u4u822t18/) SCOPUS
  • E. Kalnina, A. Kalnins, E. Celms, A. Sostaks, J. Iraids. Generation mechanisms in graphical template language. J. Osis, O. Nikiforova (Eds.), Proceedings of MDA&MTDD 2010 2nd International Workshop on Model-Driven Architecture and Modeling Theory-Driven Development. In conjuction with ENASE 2010, Athens, Greece, July 2010, SciTePress, Portugal, 2010, pp. 43-52. SCOPUS
  • E. Kalnina, A. Kalnins, E. Celms, A. Sostaks, J. Iraids. Transformation Synthesis Language – Template MOLA. In: Scientific Papers University of Latvia, Vol. 756, Computer Science and Information Technologies, Riga, Latvia, 2010, pp. 77–98.
  • A. Kalnins, E. Kalnina, E. Celms, A. Sostaks. Model driven path from requirements to code. In: Scientific Papers University of Latvia, Vol. 756, Computer Science and Information Technologies, Riga, Latvia, 2010, pp. 33–57.
  • M. Smialek, A. Kalnins, E. Kalnina, A. Ambroziewicz, T. Straszak, K. Wolter. Comprehensive System for Systematic Case-Driven Software Reuse. In: J. van Leeuwen, A. Muscholl, D. Peleg, J. Pokorny, B. Rumpe: In Proceedings of SOFSEM 2010: Theory and Practice of Computer Science, Vol 5901, LNCS, Springer, Berlin/Heidelberg, 2010, pp. 697-708. (http://www.springerlink.com/content/6443456385974684/) SCI/SCOPUS
  • E. Kalnina, A. Kalnins, E. Celms, A. Sostaks. Graphical template language for transformation synthesis. M. van den Brand, D. Gasevic, J. Gray (Eds.): In Proceedings of Second International Conference, SLE 2009, Denver, CO, USA, October 5-6, 2009 Revised Selected Papers, LNCS 5969, Springer, Heidelberg, 2010, pp. 244-253. (http://www.springerlink.com/content/5822717726227511/) SCOPUS
  • A. Kalnins, E. Kalnina, E. Celms and A. Sostaks. From requirements to code in a model driven way. In: J. Grundspenkis, M. Kirikova, Y. Manolopoulus, L. Novickis: In Proceedings of Associated Workshops and Doctoral Consortium of the 13th East European Conference, ADBIS 2009, Riga, Latvia, September 7-10, 2009. Revised Selected, Vol 5968, LNCS, Springer, Berlin/Heidelberg, 2010, 161-168. SCI/SCOPUS (http://www.springerlink.com/content/7187u14050044811/)
  • K. Podnieks. Goedel's Incompletenesss Theorem. In: Matematika XX veka. Vzgljad iz Peterburga, MCNMO, Moscow, 2010, pp.170-174 (in Russian) (http://biblio.mccme.ru/node/2247).
  • J.Barzdinš, G.Barzdinš, K.Cerans, R.Liepinš and A.Sprogis "OWLGrEd: a UML Style Graphical Editor for OWL", Ontology Repositories and Editors for the Semantic Web, Proceedings of the 1st Workshop on Ontology Repositories and Editors for the Semantic Web, Hersonissos, Crete, Greece, May 31st, 2010, 5 p. (http://sunsite.informatik.rwth-aachen.de/Publications/CEUR-WS/Vol-596/)
  • J.Barzdinš, G.Barzdinš, K.Cerans, R.Liepinš and A.Sprogis “OWLGrEd: a UML Style Graphical Notation and Editor for OWL 2”. OWL: Experiences and Directions, 7th International Workshop, San Francisco, California, USA, 21-22 June 2010, 4 p. (http://sunsite.informatik.rwth-aachen.de/Publications/CEUR-WS/Vol-614/)
  • A. Sprogis, R. Liepinš, J. Barzdinš, K. Cerans, S. Kozlovics, L. Lace, E. Rencis and A. Zarinš „GRAF: a Graphical Tool Building Framework”. Proceedings of the Tools and Consultancy Track. European Conference on Model-Driven Architecture Foundations and Applications, Paris, France, 2010, pp.18 – 21.
  • M.Zviedris. "Ontology repository for User Interaction". ORES-2010 Workshop on Ontology Repositories and Editiors for the Semantic Web, volume http://CEUR-WS.org/Vol-596/ .CEUR, 2010.
  • G.Bumans, K.Cerans. RDB2OWL: a Practical Approach for Transforming RDB Data into RDF/OWL. // Proceedings of the 6th International Conference on Semantic Systems, Graz, Austria, September 2010, ACM International Conference Proceeding Series, ISBN 9781450300148 (2010) Article No.25, 3p. SCOPUS
  • G.Bumans, K.Cerans. RDB2OWL: Mapping Relational Databases into OWL Ontologies - a Practical Approach. // Proceedings of the Ninth International Baltic Conference - Baltic DB&IS 2010, Riga, Latvia, July 5-7, 2010, University of Latvia, p. 393-408.
  • M.Opmanis, K.Cerans. JR: A Multilevel Data Repository. // Proceedings of the Ninth International Baltic Conference - Baltic DB&IS 2010, Riga, Latvia, July 5-7, 2010, University of Latvia, p. 375.-390.
  • S. Rikacovs, J. Barzdins, Export of Relational Databases to RDF Databases: a Case Study,P. Forbrig and H. Günther (eds.), in proc. of Business Informatics Research (BIR 2010), Springer LNBIP 64, pp. 203 – 211. SCOPUS
  • J.Barzdins, G.Barzdins, K.Cerans, R.Liepins, A.Sprogis. UML Style Graphical Notation and Editor for OWL 2. // P. Forbrig and H. Günther (eds.), Perspectives in Business Informatics Research (BIR 2010), LNBIP, Springer 2010, vol. 64, p. 102-113. SCOPUS
  • A. Sostaks. Pattern Matching in MOLA. J. Barzdins, M. Kirikova (Eds.), Proceedings of the 9th International Baltic Conference on Databases and Information Systems (Baltic DB&IS'2010), Riga, Latvia, July 5-7, 2010, University of Latvia Press, Riga, Latvia, 2010, pp. 309-324.
  • J. Bicevskis, J.Cerina-Berzina, G. Karnitis, L.Lace, I.Medvedis, S.Nesterovs Domain Specific Business Process Modeling in Practice Proceedings of the Ninth International Baltic Conference - Baltic DB&IS 2010, Riga, Latvia, July 5-7, 2010, University of Latvia, pp. 61-74
  • E. Kalnina, A. Kalnins, J. Iraids., A. Sostaks, E. Celms. Model Migration with MOLA. In: S.Mazanek, A.Rensink, P. Van Gorp (Eds.), Proceedings of Transformation Tools Contest 2010 (TTC), co-located with the International Conference on Objects, Models, Components and Patterns (TOOLS Europe), Online Proceedings, 2010, pp. 38-60.
  • W.Pohl, B.A.Burton, V.Dagiene, J.Fakcharoenphol, M.Forisek, M.Hiron, M.Opmanis, B.Skupas, W. van der Vegt Get Involved! The IOI Workshop 2010, Its Goals and Results., Olympiads in Informatics, 2010, Vol.4, pp.158-169.

2009

  • J. Barzdins, K. Cerans, M. Grasmanis, A. Kalnins, S. Kozlovics, L. Lace, R. Liepins, E. Rencis, A. Sprogis and A. Zarins. Domain Specific Languages for Business Process Management: a Case Study. Proceedings of the 9th OOPSLA Workshop on Domain-Specific Modeling (DSM’09), Rossi, M., Gray, J., Sprinkle, J., Tolvanen, J.-P., (eds.), Helsinki Business School, 2009.
  • J. Barzdins, K. Cerans, M. Grasmanis, A. Kalnins, S. Kozlovics, L. Lace, R. Liepins, E. Rencis, A. Sprogis, A. Zarins. Domain Specific Languages for Business Process Management: a Case Study. Proceedings of 9th OOPSLA Workshop on Domain-Specific Modeling, Orlando, USA, October 2009, pp. 34– 40.
  • A. Kalnins, E. Celms, E. Kalnina and A. Sostaks. Behaviour Modelling Notation for Information System Design. Proceedings of the 1st Workshop on Behaviour Modelling in Model-Driven Architecture, Enschede, The Netherlands, June 23, 2009, ACM International Conference Proceeding Series, Vol. 379, ACM, 2009.(published digitally).SCOPUS
  • E. Kalnina, A. Kalnins. DSL tool development with transformations and static mappings. Chaudron, Michel R. V. (Ed.), Models in Software Engineering, Workshops and Symposia at MODELS 2008, Toulouse, France, September 28 - October 3, 2008. Reports and Revised Selected Papers, Lecture Notes in Computer Science, Programming and Software Engineering, Vol. 5421, 2009, pp. 356 – 370. SCOPUS
  • J. Barzdins, K. Cerans, S. Kozlovics, E. Rencis, A. Zarins. A Graph Diagram Engine for the Transformation-Driven Architecture. Proceedings of MDDAUI’09 Workshop of International Conference on Intelligent User Interfaces 2009,Sanibel Island, Florida, USA, pp. 29 – 32, 2009.
  • G. Barzdins, E. Liepins, M. Veilande, M. Zviedris. Ontology Enabled Graphical Database Query Tool for End-Users. In: Databases and Information Systems V. Volume 187 Frontiers in Artificial Intelligence and Applications, IOS Press, 2009, pp.105-116. SCOPUS
  • G. Barzdins, J. Barzdins, K. Cerans. From Databases to Ontologies.// Semantic Web Engineering in the Knowledge Society / ed. Jorge Cardoso, Miltiadis Lytras.. Hershey, PA ; London : Information Science Reference, 2009. P.242-266.
  • Guntis Barzdins, Sergejs Rikacovs, Marta Veilande, Martins Zviedris. Ontological Re-engineering of Medical Databases, Proceedings of the Latvian Academy of Sciences. Section B, Vol. 63 (2009), No. 4/5 (663/664), pp. 153–155. SCOPUS
  • M. Krestyaninova, A. Zarins, J. Viksna, N. Kurbatova, P. Rucevskis, S. Guha Neogi, M. Gostev, T. Perheentupa, J.Knuuttila, A.Barrett, I.Lappalainen, J.Rung, K. Podnieks, U. Sarkans, M. McCarthy, A. Brazma. A System for Information Management in BioMedical Studies - SIMBioMS. Bioinformatics, vol. 25:20, 2009, pp. 2768-2769. SCOPUS
  • K. Podnieks. Towards Model-Based Model of Cognition. The Reasoner, Vol. 3, N 6, June 2009, pp. 5-6 (http://www.kent.ac.uk/secl/philosophy/jw/TheReasoner/vol3/TheReasoner-3(6).pdf).
  • K. Podnieks. Is Scientific Modeling an Indirect Methodology? The Reasoner, Vol. 3, N 1, January 2009, pp. 4-5 (http://www.kent.ac.uk/secl/philosophy/jw/TheReasoner/vol3/TheReasoner-3(1).pdf).
  • Guntis Barzdins, Sergejs Rikacovs, Martins Zviedris. Graphical query : language as SPARQL frontend // Advances in databases and information systems : 13th East-European conference ADBIS 2009, associated workshops and doctoral consortium, Riga, Latvia, September 7-9. 2009 : local proceedings.. Riga : Riga Technical University, 2009. Pp. 93-107.
  • M.Opmanis. Team competition in mathematics and informatics „Ugale”- finding new task types. , Olympiads in Informatics, 2009, Vol.3, pp.80-100.
  • Timo PORANEN, Valentina DAGIENE, Åsmund ELDHUSET, Heikki HYYRÖ, Marcin KUBICA, Antti LAAKSONEN, Martins OPMANIS, Wolfgang POHL, Jurate SKUPIENE, Pär SÖDERHJELM, Ahto TRUU. -Baltic Olympiads in Informatics: Challenges for Training Together., Olympiads in Informatics, 2009, Vol.3, pp. 112-131.

2008

  • J. Barzdins, A. Kalnins, E. Rencis, S. Rikacovs. Model Transformation Languages and their Implementation by Bootstrapping Method. Pillars of Computer Science, Lecture Notes in Computer Science, Vol. 4800, Springer-Verlag, 2008, pp. 130-145. SCOPUS
  • Daniel Varro, Mark Asztalos, Denes Bisztray, Artur Boronat, Duc-Hanh Dang, Rubino Geiss, Joel Greenyer, Pieter Van Gorp, Ole Kniemeyer, Anantha Narayanan, Edgars Rencis, and Erhard Weinell. Transformation of UML Models to CSP: A Case Study for Graph Transformation Tools. Proceedings of 3rd International Workshop Applications of Graph Transformation with Industrial Relevance (AGTIVE '07). Springer, Berlin, LNCS, vol. 5058, pp. 540 – 565, 2008. SCOPUS
  • R.Najmanovich, N.Kurbatova and J. Thornton. Detection of 3D atomic similarities and their use in the discrimination of small-molecule protein binding sites. Bioinformatics, vol. 24, i105-i111, 2008. SCI
  • J. Barzdins, S. Kozlovics, E. Rencis. The Transformation-Driven Architecture. Proceedings of DSM'08 Workshop of OOPSLA 2008, Nashville, Tennessee, USA, pp. 60 – 63, 2008.
  • K. Podnieks. Indispensability Argument and Set Theory. The Reasoner, Vol. 2, N 11, November 2008, pp. 8-9 (http://www.kent.ac.uk/secl/philosophy/jw/TheReasoner/vol3/TheReasoner-3(11).pdf).
  • G. Barzdins, E. Liepins, M. Veilande, M. Zviedris. Semantic Latvia Approach in the Medical Domain, Proceedings of the 8th International Baltic Conference (Baltic DB&IS 2008); H.M Haav, A.Kalja (Eds.), Tallinn University of Technology Press, ISBN 978-9985-59-789-7, pp.89-102.
  • Barzdins G., Barzdins J., Cerans K. From Databases to Ontologies. Semantic Web Engineering in the Knowledge Society; Redaktori: J.Cardoso, M. Lytras, IGI Global, 2008, pp. 242–266.
  • J.Barzdins, S. Rikacovs, Towards a Seed Transformation Language and Its Implementation. Models 2008, Doctoral Symposium, ETH Zurich, 2008, pp. 27-32.
  • S. Rikacovs, The base transformation language L0+ and its implementation, Scientific Chapters, University of Latvia, “Computer Science and Information Technologies”, 2008, pp. 75–102
  • O. Vilitis, A. Kalnins. Technical Solutions for the Transformation-Driven Graphical Tool Building Platform METAclipse. Scientific Papers University of Latvia, Vol. 733, Computer Science and Information Technologies, Riga, Latvia, 2008, pp. 179–212.
  • A. Sostaks, A. Kalnins. The Implementation of MOLA to L3 Compiler. Scientific Papers University of Latvia, Vol. 733, Computer Science and Information Technologies, Riga, Latvia, 2008, pp. 140–178.
  • O. Vilitis, A. Kalnins. A Proxy Approach to External Model Repository Integration in Eclipse EMF Infrastructure. Proceedings of ECMDA MDTPI '08 workshop, Fraunhofer IRB Verlag, Berlin, Germany, June 9, 2008, pp. 67-78
  • E. Rencis. Model Transformation Languages L1, L2, L3 and their Implementation. Scientific Papers, University of Latvia, “Computer Science and Information Technologies”, 2008, pp. 103-139.
  • Elina Kalnina. DSL tool development with transformations and static mappings. ACM/IEEE 11th International Conference on Model Driven Engineering Languages and Systems, Toulouse, France, 28 September - 3 October 2008 (Models 2008), Doctoral Symposium. ETH Zürich Technical Report 606, September 2008, pp. 9-14.
  • N.Kurbatova, J.Viksna. Exploration of evolutionary relations between protein structures. Proceedings of BIRD 2008, Communications in Computer and Information Science, vol. 13, 154-166, 2008.
  • R.Najmanovich, N.Kurbatova and J. Thornton. Detection of 3D atomic similarities and their use in the discrimination of small-molecule protein binding sites. Bioinformatics, vol. 24, i105-i111, 2008. SCI
  • . . .

2007

  • J.Viksna and D.Gilbert. Assessment of the probabilities for evolutionary structural changes in protein folds. Bioinformatics, vol. 23, 832-841, 2007. SCI
  • A. Kalnins, O. Vilitis, E. Celms, E. Kalnina, A. Sostaks, J. Barzdins. Building Tools by Model Transformations in Eclipse. Proceedings of DSM’07 workshop of OOPSLA 2007, Montreal, Canada, Jyvaskyla University Printing House, 2007, pp. 194–207.
  • J. Barzdins, A. Zarins, K. Cerans, A. Kalnins, E. Rencis, L. Lace, R. Liepins, A. Sprogis. GrTP: Transformation Based Graphical Tool Building Platform. Proceedings of Workshop on Model Driven Development of Advanced User Interfaces, MODELS 2007, Nashville, USA.
  • Janis Barzdinš, Andris Zarinš, Karlis Cerans, Audris Kalninš, Edgars Rencis, Lelde Lace, Renars Liepinš, Arturs Sprogis. GrTP: Transformation Based Graphical Tool Building Platform. Proceedings of the MoDELS'07 Workshop on Model Driven Development of Advanced User Interfaces (MDDAUI-2007), Nashville, Tennessee, USA, October 1, 2007, CEUR Workshop Proceedings, http://ceur-ws.org, Vol 297, ISSN 1613-0073.
  • J. Viksna, E. Celms, M. Opmanis, K. Podnieks, P. Rucevskis, A. Zarins, A. Barrett, S. Guha Neogi, M. Krestyaninova, M. McCarthy, A. Brazma and U. Sarkans. PASSIM – an open source software system for managing information in biomedical studies. (2007) BMC Bioinformatics, 8:52.SCI/SCOPUS
  • N.Kurbatova, L.Mancinska and J.Viksna. Protein structure comparison based on fold evolution. In Proceedings of GCB 2007, Lecture Notes in Informatics, vol. 115, 78-89, 2007.SCOPUS
  • ...

2006

  • J. Barzdins, G. Barzdins, R. Balodis, K. Cerans, A. Kalnins, M. Opmanis, K. Podnieks. Towards Semantic Latvia. Communications of the 7th International Baltic Conference on Databases and Information Systems (Baltic DB&IS’2006). , Vilnius, Lithuania, July 3-6, 2006, pp. 203-218. SCI
  • A. Kalninš, E. Celms, A. Sostaks: Simple and Efficient Implementation of Pattern Matching in MOLA Tool; Proceedings of the 7th International Baltic Conference on Databases and Information Systems (Baltic DB&IS’2006), Vilnius, Lithuania, July 3-6, 2006; 159. – 167. lpp.SCI/SCOPUS
  • A. Kalnins, E. Celms, A. Sostaks. Tool support for MOLA. Fourth International Conference on Generative Programming and Component Engineering (GPCE'05). Proceedings of the Workshop on Graph and Model Transformation (GraMoT) , Tallinn, Estonia, September 2005, Electronic Notes in Theoretical Computer Science 152 (1-2), pp. 83-96. SCOPUS
  • A. Kalninš, V. Vitolinš: Use of UML and Model Transformations for Workflow Process Definitions; Communications of the 7th International Baltic Conference on Databases and Information Systems (Baltic DB&IS’2006). , Vilnius, Lithuania, July 3-6, 2006; 3. – 14. lpp. SCI/SCOPUS
  • J. Barzdinš, A. Kalninš: MDA Support by Transformation Based Tool; Proceedings of First International Workshop MoRSe 2006. , Warsaw, Poland, October 2006; 21. – 24. lpp.
  • M.Opmanis, V.Dagiene, A.Truu. Task Types at "Beaver" Contests. - Proceedings of the Second International Conference "Informatics in Secondary Schools: Evolution and Perspectives" (ISSEP 2006). , Vilnius, Lithuania, November 7-11, 2006, pp. 509-519.
  • M.Opmanis. Some Ways to Improve Olympiads in Informatics. - Informatics in Education, 2006, Vol.5, No.1, 113.-124.lpp. SCOPUS

2005 and before

  • A. Kalnins, J. Barzdins, E. Celms. Model Transformation Language MOLA. - Lecture Notes in Computer Science, Springer, v. 3599, 2005. Model Driven Architecture: European MDA Workshops: Foundations and Applications, MDAFA 2003 and MDAFA 2004, Twente, The Netherlands, June 26-27, 2003 and Linkoping, Sweden, June 10-11, 2004. Revised Selected Papers, pp. 62-76.SCI/SCOPUS
  • A. Kalnins, J. Barzdins, E. Celms. Model Transformation Language MOLA: Extended Patterns. – Proceedings of Baltic DB&IS 2004, Riga, Latvia, pp.339-356. SCI
  • D.Ruklisa, A.Brazma and J.Viksna. Reconstruction of gene regulatory networks under the Finite State Linear Model. Genome Informatics, vol. 16(2), 225-236, 2005.
  • A. Kalnins, J. Barzdins, E. Celms. UML Business Modeling Profile. - Proceedings of ISD’2004, Vilnius, Lithuania, September 9-11, 2004, pp.182-194. SCI
  • J.Viksna, D.Gilbert and G.Torrence. Domain discovery method for topological profile searches in protein structures. Genome Informatics, vol. 15(2), 72-81, 2004.
  • L. Lace, E. Celms, A. Kalnins. Diagram definition facilities in a generic modeling tool. - Proceedings of International Conference on Modelling and Simulation of Business systems, Vilnius, 2003, pp.220-224.SCI
  • D.Gilbert, D.Westhead and J.Viksna. Techniques for comparison, pattern matching and pattern discovery: From sequences to protein topology. In Artificial Intelligence and Heuristic Methods in Bioinformatics, 128-147, 2003.
  • J.Viksna, D.Gilbert and G.Torrance. Protein Structure Comparison Based on Profiles of Topological Motifs: a Feasible Way to Deal with Information from Negative Examples. In Proceedings of GCB 2003, 159-165, 2003.
  • J.Rung, T.Schlitt, A.Brazma, K.Freivalds and J.Vilo. Building and analysing genome-wide gene disruption networks. Bioinformatics, vol. 18 (Supplement 2), 202-210, 2002.
  • J.Viksna and D.Gilbert. Pattern matching and pattern discovery algorithms for protein topologies. In Proceedings of WABI 2001, Lecture Notes in Computer Science, vol. 2149, 98-111, 2001.
  • D.Gilbert, D.Westhead, J.Viksna and J.Thornton. Topology-based protein structure comparison using a pattern discovery technique. Computers & Chemistry, vol. 26(1), 23-30, 2001.