Indexed, Peer-Reviewed Publications

• M. P. Barzine (EMBL-EBI), K. Freivalds, J. C. Wright (Institute of Cancer Research, London), M. Opmanis, D. Rituma, F. Z. Ghavidel (University of Bergen), A. F. Jarnuczak (EMBL-EBI), E. Celms, K. Čerāns, I. Jonassen (University of Bergen), L. Lace, J. A. Vizcaíno (EMBL-EBI), J. S. Choudhary (Institute of Cancer Research, London), A. Brazma (EMBL-EBI), J. Viksna. Using Deep Learning to Extrapolate Protein Expression Measurements. Proteomics journal, Volume 20, Issue 21-22, November 2020, Article number 2000009. (SCOPUS, Web of Science) DOI, link
• J. Ovčiņņikova. Ontology export patterns in OWLGrEd Editor. Baltic Journal of Modern Computing, Volume 8, Issue 3, 2020, Pages 444-460. (SCOPUS) DOI, link
• G. Barzdins, D. Gosko, K. Cerans, O. F. Barzdins, A. Znotins, P. F. Barzdins, N. Gruzitis, M. Grasmanis, J. Barzdins, U. Lavrinovics, S. K. Mayer, I. Students, E. Celms, A. Sprogis, G. Nespore-Berzkalne, P. Paikens. Pini Language and PiniTree Ontology Editor: Annotation and Verbalisation for Atomised Journalism. Lecture Notes in Computer Science, Volume 12124 LNCS, 2020, Pages 32-38. Extended Semantic Web Conference, ESWC 2020. (SCOPUS) DOI, link
• P. Barzdins, E. Celms, J. Barzdins, A. Kalnins, A. Sprogis, M. Grasmanis, S. Rikacovs. Metamodel specialization based DSL for DL lifecycle data management. MODELS '20: Proceedings of the 23rd ACM/IEEE International Conference on Model Driven Engineering Languages and Systems: Companion Proceedings, October 2020 Article No.: 16. (SCOPUS) DOI, link
• E. Kalniņa. Concrete syntax-based find for graphical DSLs. MODELS '20: Proceedings of the 23rd ACM/IEEE International Conference on Model Driven Engineering Languages and Systems: Companion Proceedings, October 2020 Article No.: 11. (SCOPUS) DOI, link
• S. Kozlovičs. webAppOS: Creating the Illusion of a Single Computer for Web Application Developers. Lecture Notes in Business Information Processing (LNBIP), Volume 399, 2020, Pages 1-21, 15th International Conference on Web Information Systems and Technologies, WEBIST 2019. (SCOPUS) DOI, link
• M.H. Bailey, W.U. Meyerson, L.J. Dursi, (...) J. Vīksna (...) M. J. van de Vijver, L. van’t Veer, C. von Mering. Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples. Nature Communications. Volume 11, Issue 1, 1 December 2020, Article number 4748. (SCOPUS) DOI, link
• V. Amaral, B. Norberto, M. Goulão, M. Aldinucci, S. Benkner, A. Bracciali, P. Carreira, E. Celms, L. Correia, C. Grelck, H. Karatza, C. Kessler, P. Kilpatrick, H. Martiniano, I. Mavridis, S. Pllana, A. Respício, J. Simão, L. Veiga, A. Visa. Programming languages for data-Intensive HPC applications: A systematic mapping study. Parallel Computing journal, Volume 91, March 2020, Article number 102584. (SCOPUS, Web of Science) DOI, link
• The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (incl. Juris Viksna) Pan-cancer analysis of whole genomes. Nature, vol. 578, 2020, pp.82-93. (SCOPUS, Web of Science) DOI, link
• G. Melkus, P. Rucevskis, E. Celms, K. Čerāns, K. Freivalds, P. Kikusts, L. Lace, M. Opmanis, D. Rituma, J. Viksna. Network motif-based analysis of regulatory patterns in paralogous gene pairs. Journal of Bioinformatics and Computational Biology, Volume 18, Issue 3, 2020, Article number 2040008, (SCOPUS, Web of Science) DOI, link
• C. H. Li, s. D. Prokopec, R. X. Sun, J. Viksna, et al. Sex differences in oncogenic mutational processes. Nature Communications, Volume 11, Article number 4330 (2020), (SCOPUS) DOI, link
• E. Celms, J. Barzdins, A. Kalnins, A. Sprogis, M. Grasmanis, S. Rikacovs. Towards DSL for DL Lifecycle Data Management. Communications in Computer and Information Science, Volume 1243 CCIS, 2020, Pages 205-218, 14th International Baltic Conference on Databases and Information Systems, DB and IS 2020, Tallinn, Estonia, 2020. (SCOPUS) DOI, link
• I. J. Pretkalnins, A. Sprogis, G. Barzdins. Text Extraction from Scrolling News Tickers. Communications in Computer and Information Science, Volume 1243 CCIS, 2020, Pages 130-143, 14th International Baltic Conference on Databases and Information Systems, DB and IS 2020, Tallinn, Estonia, 2020. (SCOPUS) DOI, link
• I. Arhipova, G. Berzins, E. Brekis, J. Binde, M. Opmanis, A. Erglis, E. Ansonska. Mobile phone data statistics as a dynamic proxy indicator in assessing regional economic activity and human commuting patterns. Wiley Online Library, Expert Systems (2020), Article number e12530. (SCOPUS, Web of Science) DOI, link
• L. Lace, G. Melkus, P. Rucevskis, E. Celms, K. Čerāns, P. Kikusts, M. Opmanis, D. Rituma, J. Viksna. Characteristic Topological Features of Promoter Capture Hi-C Interaction Networks.
  Communications in Computer and Information Science, Volume 1211 CCIS, 2020, Pages 192-215, 12th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 2019, Prague, Czech. (SCOPUS) DOI, link
• E.Rencis. Knowledge Extraction from Healthcare Data Using User-Adaptable Keywords-Based Query Language. ACM Proceedings of the 2020 the 4th International Conference on Information System and Data Mining, ICISDM 2020, May 2020, Hilo, Hawaii, USA, Pages 128–131. (SCOPUS) DOI, link
• G. Melkus, P. Rucevskis, E. Celms, K. Čerāns, K. Freivalds, P. Kikusts, L. Lāce, M. Opmanis, D. Rituma, J. Vīksna. Graph-based network analysis of transcriptional regulation pattern divergence in duplicated yeast gene pairs. ACM International Conference Proceeding Series, 10th International Conference on Computational Systems-Biology and Bioinformatics, CSBIO 2019, Nice, France. (SCOPUS) DOI, link

Posters in International Conferences

• J. Viksna, G. Melkus, E. Celms, K. Čerāns, K. Freivalds, P. Kikusts, L. Lace, M. Opmanis, D. Rituma, P. Rucevskis. Topological features of chromatin interaction networks. RECOMB’2020, The 24th Annual International Conference on Research in Computational Molecular Biology, June 22-25, 2020, Virtual Conference. Fiera di Padova, Italy.

Publications in the Annual Conference of the University of Latvia

• A. Šostaks, A. Sproģis, S. Rikačovs, E. Celms, A. Kalniņš, M. Siliņa. "Baltic Large Scale Computing - pieejama skaitļošana", Referāts LU 78. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2020. gada 7. februāris.
• E. Ozoliņš, A. Draguns, K. Freivalds, A. Šostaks, M. Apinis. "Neironu tīklu arhitektūras garu virkņu apstrādei”, Referāts LU 78. konferencē, Sekcijas sēde “Datorzinātnes un informācijas tehnoloģijas", 2020. gada 7. februāris.